PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g01640.2.p
Common NameBRADI_1g01640
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 656aa    MW: 69379.1 Da    PI: 4.5506
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g01640.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.23.1e-107519815128
               NAM  15 vveyLkkkvegkk.leleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                       v +yL   +++k+  +l ++++++d+y + Pw+  +         ++ ++ +e +f +++d +       +++ ++g+W+    d++vls++g
  Bradi1g01640.2.p  75 VINYLGGWIDNKDdASLPKFVHHIDLYACPPWEAVQglkpalratRYGGGGEEAWFVVSEDGERLL--LGRKVGEAGTWHLERADRPVLSADG 165
                       559******99995555667************9864467777766444455566666665555433..34456779***************** PP

               NAM  98 elvglkktLvfykg..rapkgektdWvmheyrl 128
                       + vg k+++ + k   +  k+ +t W+  +y+l
  Bradi1g01640.2.p 166 KSVGSKTSFSYKKSpvKGGKAISTGWINMQYSL 198
                       ***********975346677779****999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.69960213IPR003441NAC domain
SuperFamilySSF1019413.92E-1076203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MAISSVAESS PSEAVAVDVG FPGVEASSER QAAATASGQD GNITEPLSEL DVAAAPVSGD  60
QDGAGKEPVL SELDVINYLG GWIDNKDDAS LPKFVHHIDL YACPPWEAVQ GLKPALRATR  120
YGGGGEEAWF VVSEDGERLL LGRKVGEAGT WHLERADRPV LSADGKSVGS KTSFSYKKSP  180
VKGGKAISTG WINMQYSLGN DKKGPVISMI YRSSHDYAAK TSTVAAVSVG QTSKPARPRA  240
AAAQKRKAVA LAVAEDSQDG ENTGSAATRL SCLTHTIVHD LLVQAAGKAV HCDDLKEACQ  300
IQEFVAAKAI YLTMTHDLGL DISIVSDAFS RLDVLIKNVV MTKELTDSAR HLLFRLCNRM  360
STTILSDYLN ELPKRVLREM MVQSALPVTF TAASSSGVKR LRQEKTGMCP ITLEETDGHF  420
MSEDYPVRGD KAAEDYTKIF AADMLNGDEI SPIGGGAHDG FLFDIPEGEG GDSAGFADMP  480
GVGDNLEVLV GAHEFPASFA APQVAGQQGP EAGMVAEPAS APCRVLEETD LHQFALKDSA  540
RRSLVGAGDS ATDAFRHYDF SANNNADGAF DYSNFNNDAA GSTGFVVRAF DYPNFNNGAG  600
GSAARAFEYP DTGAAGSTGL AAGGSERQVH DDRSMDIDDE SDNFDWVGLL NQVRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g01640.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315582.10.0uncharacterized protein LOC106865747 isoform X2
TrEMBLA0A0Q3GNT90.0A0A0Q3GNT9_BRADI; Uncharacterized protein
STRINGBRADI1G01640.10.0(Brachypodium distachyon)