PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g01650.1.p
Common NameBRADI_1g01650
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 369aa    MW: 40001.4 Da    PI: 4.8509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g01650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.98.1e-105016521128
               NAM  21 kkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                       ++ ++++ +l  +++++d y + Pw+  +         k+ ++ek  +f ++ d +    +r +++ ++g+W+     k++l + ++++v  k
  Bradi1g01650.1.p  50 RRWKNNNGDLPAFVHKLDPYAYPPWEAVQglkhdrratKHVGGEKT-WFIVSVDGN----RRGRKVGEAGTWHVEDGGKAILGAdGSSVVANK 137
                       33444444555579***********986445556553222223333.444443332....355558889****999999999885777899** PP

               NAM 104 ktLvfykgrapkge...ktdWvmheyrl 128
                       k + + k r +kg    +t W+m +y+l
  Bradi1g01650.1.p 138 KRFSYKKSRPEKGGkqeSTGWIMMQYSL 165
                       ******8877776422279*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.47230180IPR003441NAC domain
SuperFamilySSF1019412.22E-1545171IPR003441NAC domain
PfamPF023655.0E-648165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAISAAAAAN FLDAETTGNC EPHVAAPASG EDGNNKEPVL SELALVDILR RWKNNNGDLP  60
AFVHKLDPYA YPPWEAVQGL KHDRRATKHV GGEKTWFIVS VDGNRRGRKV GEAGTWHVED  120
GGKAILGADG SSVVANKKRF SYKKSRPEKG GKQESTGWIM MQYSLEKDKE RDLISMVYKS  180
SHKYAARTST PASSHAGAEE DIASVDAPTP AVSIRQTSKR PIPVRSLTIE EAEGHLMSED  240
YPVPGDKAAE DYTEMYASML RQEITPIGGG RGAHDGRFLV DVPEGEGGDS AGFADHMLGV  300
AFGYPNFSAV NNGAGGSTGL LHDRSMDIDQ SDGYDWEWDD LLNLLPAENL DFKALEDKGL  360
DFYDMINN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g01650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313127.10.0uncharacterized protein LOC112269889
RefseqXP_024313128.10.0uncharacterized protein LOC112269889
RefseqXP_024313129.10.0uncharacterized protein LOC112269889
RefseqXP_024313130.10.0uncharacterized protein LOC112269889
RefseqXP_024313131.10.0uncharacterized protein LOC112269889
RefseqXP_024313132.10.0uncharacterized protein LOC112269889
RefseqXP_024313133.10.0uncharacterized protein LOC112269889
RefseqXP_024313134.10.0uncharacterized protein LOC112269889
TrEMBLI1GKV40.0I1GKV4_BRADI; Uncharacterized protein
STRINGBRADI1G01650.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.12e-07NAC domain containing protein 2