PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g01683.1.p
Common NameBRADI_1g01683, LOC104581929
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 361aa    MW: 39117.2 Da    PI: 4.2791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g01683.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.15.2e-1731402127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknra..tk...sg 81 
                       +pG+ F+P+++el +  L+ k++g   ++  +i+ +d+y+++P++L k            +e ewyfFs+ + ++++++  +ra  +    + 
  Bradi1g01683.1.p   3 APGCTFEPSEQELTDICLHGKITGAGRDV-GAIHVADVYSADPETLAKsfapapgtGRGDKEPEWYFFSPVHYASKKKNSGRRAriIGgdsNK 94 
                       69************************999.89**************85577777532222445******988776655544443223333355 PP

               NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyr 127
                        W++     +v   ++++ g k  L++   ++ ++k e++ W++ e+ 
  Bradi1g01683.1.p  95 KWHSEIGAVPVE--GSAVGGHKVNLTYMvrSNASEKHERAGWILAEFG 140
                       699887766665..588999*******97656777889********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.7832158IPR003441NAC domain
SuperFamilySSF1019418.63E-193157IPR003441NAC domain
PfamPF023652.7E-94140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAAPGCTFEP SEQELTDICL HGKITGAGRD VGAIHVADVY SADPETLAKS FAPAPGTGRG  60
DKEPEWYFFS PVHYASKKKN SGRRARIIGG DSNKKWHSEI GAVPVEGSAV GGHKVNLTYM  120
VRSNASEKHE RAGWILAEFG IAPEHGGGQL ELCKLHRSPH FQETAAGSKK RKAAAADELY  180
AADRRKNLCL RQEMPEELEE METMEGGAAA VDLQEEPVLD DTARWMMYLE TQRMYFSDDI  240
QGTQQQQQVP ILDDTWRLAL EEIERQLLSD DETLGGAGQV IDPAEEDESG AGMEQQQGGG  300
GGCDDEDDAR MECTYEELFG IDGDVEDDYM AMASNAAAAA ACEGQQLHVA AEGCIQVSRS  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g01683.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229406.10.0NAC domain-containing protein 17
TrEMBLA0A0Q3N5X10.0A0A0Q3N5X1_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2274024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.17e-10NAC domain containing protein 35