PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g01801.1.p

Common Name

BRADI_1g01801, LOC104581931

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 260aa MW: 28576 Da PI: 7.5024

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g01801.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	55.5	2e-17	2	137	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksg 81 ++G+ F P+d++lvv++L+++++g + + ++++++d+y++ P dL + + +++ wyfFs++++ ++ ++ r+ Bradi1g01801.1.p 2 AAGVVFTPSDHDLVVHFLRPRIAGADvFGRGRFFHDADVYSAAPADLVHgrdhapgtnkldSKGMDRSTWYFFSPAQRLQT---KSGRVGG-- 89 68**********************5444456**********7457888988865322225569***99875...5666533.. PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 + +g +k+vl+++g+ vg + L f +++ ge + W+m ey++ Bradi1g01801.1.p 90 --RRQGGEKPVLDSDGRRVGYMRKLSFLIKKTMPGEpmtRVGWCMTEYEI 137 ..68999****************965555444334899****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.962	1	152	IPR003441	NAC domain
Pfam	PF02365	3.7E-12	3	137	IPR003441	NAC domain
SuperFamily	SSF101941	8.5E-25	3	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MAAGVVFTPS DHDLVVHFLR PRIAGADVFG RGRFFHDADV YSAAPADLVH GRDHAPGTNK 60 LDSKGMDRST WYFFSPAQRL QTKSGRVGGR RQGGEKPVLD SDGRRVGYMR KLSFLIKKTM 120 PGEPMTRVGW CMTEYEIDGD EDRLVLCKVY RSRSRSKNTE TASMVAGSKK RKAADDDELY 180 ALGVYAGAAD AANQHKNVCR RQEMPPRIQE IETMGGAEQV RNPSERAEED DGRAGGGRGC 240 DEDDGRFECK LEELLGGGV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g01801.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229408.1	0.0	NAC domain-containing protein 72
TrEMBL	A0A0Q3GNX3	0.0	A0A0Q3GNX3_BRADI; Uncharacterized protein
STRING	EMT05147	4e-29	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4363	21	58
Representative plant	OGRP11899	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-12	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Bradi1g01801.1.p
Entrez Gene	104581931