PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03313.1.p
Common NameBRADI_1g03313
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 245aa    MW: 26755.9 Da    PI: 6.4229
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03313.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.11.2e-081712332127
               NAM  32 evikevdiykvePwdLpk......kvkaeek..ewyfFskrdkkyatgkrknratksgy..WkatgkdkevlskkgelvglkktLvfy..kgr 112
                       ++++++d+y++eP++L +       + +++k    y    + kk+++g+r++ +  +g   W++    ++v   ++++ g+ + L +   ++ 
  Bradi1g03313.1.p  17 RFFHDADVYSAEPEKLVQpflpapGTGTGDKspPAYPARYAGKKKSSGRRSRTIDGDGSknWHSEKMAQPVEG-GSAVGGCVQKLSYMvkNEA 108
                       45899***********655678774444455234465555566666565555555555445**********99.9999**********43334 PP

               NAM 113 apkgektdWvmheyr 127
                       + k+e++ W+m ey 
  Bradi1g03313.1.p 109 SGKSERAGWIMAEYG 123
                       4556799*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.4751141IPR003441NAC domain
SuperFamilySSF1019411.1E-1213139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAAADDGLDV PPGFESRFFH DADVYSAEPE KLVQPFLPAP GTGTGDKSPP AYPARYAGKK  60
KSSGRRSRTI DGDGSKNWHS EKMAQPVEGG SAVGGCVQKL SYMVKNEASG KSERAGWIMA  120
EYGISPEHGG GRLVLCKVCP STYSHKLMAA EDSPGIKFKK RKAAAGDHPE ADCFGIADPV  180
PETERAAADY GHVDHQVFGF WQAMEQEFEA SYPIPDDEVV EAQEVMWPRR HAHQQFISRR  240
MEKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03313.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229407.12e-43NAC domain-containing protein 53
RefseqXP_010229409.11e-42NAC domain-containing protein 17
TrEMBLA0A0Q3KMN30.0A0A0Q3KMN3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158