PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03710.4.p
Common NameBRADI_1g03710, LOC100837426
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 385aa    MW: 37765.1 Da    PI: 9.7035
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03710.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.8e-3954113362
            zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       e+ lkcprC+s+ntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+ss
  Bradi1g03710.4.p  54 EAGLKCPRCESSNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSS 113
                       6789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3537111IPR003851Zinc finger, Dof-type
PfamPF027012.0E-3256111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54457111IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105995IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MPAALMAPPR APDGSSGSMG GLGSGGGGGG GGSAVVKAGS MTDRARMAKI PAPEAGLKCP  60
RCESSNTKFC YFNNYSLTQP RHFCKACRRY WTRGGALRNV PVGGGCRRNK RSSKSSKSSS  120
SSSAAACGVA AGVNTSSSSS ATTSSATTGS GIMPALGQMP FFAASLVSGS GGGEGQYGVG  180
GGGGLLAGVS RSLGFPGGLM GPMGSQQLDS AVENYHHQLG GGMGGSMEQW RLPPPQMQMQ  240
QFPFFGGGRG AGPDAMSGMQ QLQQQMQAGI SNYPFEPDAG DGSGEGFAAG QMMGGGGGGG  300
KQVVPGSAGL ITQLASVKME DNPPTAMARE FLGLPAAGSL QFWAGGSGGN NGVSGGGAGA  360
PGGGSGGWVD RLAGFNSSSS GNIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03710.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685428e-72AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence.
GenBankAP0043038e-72AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBankAP0149638e-72AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559235.20.0dof zinc finger protein DOF5.1 isoform X1
RefseqXP_024312545.10.0dof zinc finger protein DOF5.4 isoform X2
TrEMBLA0A0Q3KMT30.0A0A0Q3KMT3_BRADI; Uncharacterized protein
TrEMBLA0A2K2DHY30.0A0A2K2DHY3_BRADI; Uncharacterized protein
STRINGBRADI1G03710.11e-179(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-43DNA binding with one finger 2.4