PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03770.2.p
Common NameBRADI_1g03770
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 196aa    MW: 21629 Da    PI: 11.2286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03770.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015155177123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C   F +   L  H+r+H
  Bradi1g03770.2.p 155 HECHVCRAGFETGQALGGHMRRH 177
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.3E-1096121IPR007087Zinc finger, C2H2
SMARTSM003550.9697119IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.13E-697119No hitNo description
PROSITE profilePS5015710.13897124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-6150177No hitNo description
SMARTSM003550.26155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224155182IPR007087Zinc finger, C2H2
PfamPF139121.2E-10155180IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MHTARDEPNN NFIHPRGLPA SLLFPYRPYF SQLILKLISR SISLPPFDQS KLALSSMKHQ  60
RDPSEMPLSL SLSLMAAERK IKKLRHRAGG AGESPAFVCK TCSRAFASFQ ALGGHRTSHL  120
RARNGLALSL AGSSPVRKST EQIKKPPQPQ QQQQHECHVC RAGFETGQAL GGHMRRHREE  180
AAAQLVPPVL LQLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03770.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227659.21e-140zinc finger protein ZAT12
TrEMBLA0A0Q3RGR61e-139A0A0Q3RGR6_BRADI; Uncharacterized protein
STRINGBRADI1G03770.12e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Representative plantOGRP1190434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-19C2H2 family protein