PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03790.1.p
Common NameBRADI_1g03790, LOC100838335
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 180aa    MW: 19282.7 Da    PI: 9.6054
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03790.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000946082123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cg+ F +   L  H  +H
  Bradi1g03790.1.p 60 FVCKTCGRAFASFQALGGHRTSH 82
                      89*********999998888777 PP
2zf-C2H212.40.00047121143123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F     L  H+r+H
  Bradi1g03790.1.p 121 HECHICGLGFEMGQALGGHMRRH 143
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.93E-76082No hitNo description
PROSITE profilePS5015710.6586087IPR007087Zinc finger, C2H2
PfamPF139128.8E-106084IPR007087Zinc finger, C2H2
SMARTSM003550.346082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576674.93E-7116143No hitNo description
PfamPF139127.9E-11120146IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66121148IPR007087Zinc finger, C2H2
SMARTSM003550.49121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAVKRERDQE EPAAAVSLAL SLSTDSSAAS TTTTESGGSP AAAKRQRSRS RRAAAAEGEF  60
VCKTCGRAFA SFQALGGHRT SHLRGRHGLE LGVGVARAIR EHQQRQRRKE VEEEQDKKQR  120
HECHICGLGF EMGQALGGHM RRHREEMMAG GADRWVDLAA VVAGSGAAGE PPVLLQLFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14348KRQRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03790.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4082247e-46EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559238.11e-125zinc finger protein ZAT9
TrEMBLI1GLK41e-124I1GLK4_BRADI; Uncharacterized protein
STRINGBRADI1G03790.11e-124(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Representative plantOGRP1390044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.16e-18C2H2 family protein