PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g04280.3.p
Common NameBRADI_1g04280, LOC100843504
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 256aa    MW: 26724.3 Da    PI: 6.3744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g04280.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-1176122354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h e+E+rRR+ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  Bradi1g04280.3.p  76 RNHREAEKRRRERIKSHLDRLRAVLACD-----PKIDKASLLAKAVERVRDL 122
                       68************************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.86573122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1176134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-976122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1076125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-779128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MFPAAEAATF VVEAGVAAPR QGEAAAGLPP FFMGSMWPAA AAGGGGAGAA GSEEEDEAAV  60
AMAEAALHER AVAATRNHRE AEKRRRERIK SHLDRLRAVL ACDPKIDKAS LLAKAVERVR  120
DLKQRMAGIG AESAAATPQL FPTEHDEIVV LASSGGVFEA SVCCDDRSDL LPGLIDTLRA  180
LRLRTLRAEM ATLGGRVRNV LVLARDAGAE DDDGGGDFLK EALRALVERH GAAAGAGDRP  240
KRRRTVSDMN VQAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245PKRRRTV
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g04280.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279661e-119KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559255.11e-178transcription factor bHLH106
SwissprotO806743e-45BH106_ARATH; Transcription factor bHLH106
TrEMBLI1GLR71e-176I1GLR7_BRADI; Uncharacterized protein
STRINGBRADI1G04280.11e-177(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.16e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]