PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g05037.1.p
Common NameBRADI_1g05037, LOC100827822
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 244aa    MW: 26509.2 Da    PI: 6.5346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g05037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09124171455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++ L+
  Bradi1g05037.1.p 124 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 171
                       8*************************9....677**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.69E-9118175No hitNo description
SuperFamilySSF474597.98E-17118187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-18120189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDPAAEPSWR PPAAASGASS AVTGQSNGRR RRQQPRTEPP PPSEDDSSRP VSTSGGGGSQ  60
DLIDSEAKRF RANKSSDDNG SFRTDAEGDS RNGSKVVDQN PPPPEPPKQD YIHVRARRGQ  120
ATDSHSLAER ARREKITERM KILQDLVPGC NKVIGKASVL DEIINYVQAL ERQVEFLSMK  180
LEAVNAHVNN GVETFPSKDF SAPTFNTAPG LTFDPQTPRE YAQGSPASEW LHMQIGGTYE  240
RVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g05037.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949600.0FP094960.1 Phyllostachys edulis cDNA clone: bphyem119a09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559284.11e-180transcription factor BHLH089
SwissprotQ84T081e-117BH089_ORYSJ; Transcription factor BHLH089
TrEMBLI1GM171e-178I1GM17_BRADI; Uncharacterized protein
STRINGBRADI1G05037.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-65BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]