PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g05037.2.p
Common NameBRADI_1g05037, LOC100827822
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 205aa    MW: 22186.4 Da    PI: 6.7967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g05037.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.99.8e-10124171455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++Y++ L+
  Bradi1g05037.2.p 124 SHSLAERARREKITERMKILQDLVPGC----NKVIGKASVLDEIINYVQALE 171
                       8*************************9....677**************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.26E-8118175No hitNo description
SuperFamilySSF474595.63E-17118187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-18120189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDPAAEPSWR PPAAASGASS AVTGQSNGRR RRQQPRTEPP PPSEDDSSRP VSTSGGGGSQ  60
DLIDSEAKRF RANKSSDDNG SFRTDAEGDS RNGSKVVDQN PPPPEPPKQD YIHVRARRGQ  120
ATDSHSLAER ARREKITERM KILQDLVPGC NKVIGKASVL DEIINYVQAL ERQVEFLSMK  180
LEAVNAHVNN GVETFPSKDV SCVE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g05037.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008630.0FP100863.1 Phyllostachys edulis cDNA clone: bphyem119i23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559284.11e-144transcription factor BHLH089
SwissprotQ84T083e-84BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2K2DI481e-147A0A2K2DI48_BRADI; Uncharacterized protein
STRINGBRADI1G05037.11e-143(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-53BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]