PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g05480.1.p

Common Name

BRADI_1g05480, LOC100840761

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 421aa MW: 43876.5 Da PI: 4.7584

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g05480.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.5	6e-13	229	280	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + rrkq+NRe+ArrsR RK a + eLe v +L eN++L +l ++++ Bradi1g05480.1.p 229 RLRRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSTLLRRLADVNQKY 280 5679**************************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.3E-18	225	289	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-9	226	280	No hit	No description
PROSITE profile	PS50217	11.404	227	281	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-9	229	280	No hit	No description
Pfam	PF00170	2.4E-10	229	279	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.17E-6	231	281	No hit	No description
Pfam	PF12498	2.3E-46	296	411	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MERVFSVEEI PDPFWASQPP ASRDSNAGTG AGPAAPGEGG GGAMNRCPSE WYFQKFLEEA 60 VLDSPVGGNP SPRAAPGGGG GVVVGGAEAV EVKQQPAPAP AAAAAAAATS AVVDPVEFNA 120 MLKQKLEKDL AAVAMWRATG VMPPERFAAS SSLPNADVSH IGTTNPIGGN VVPVQNQLVG 180 GTSGEQGPHF VQSDTLVKQA ASSSSREQSD DDDMEEDEIT GNANPTDQRL RRRKQSNRES 240 ARRSRSRKAA HLNELEAQVS QLRVENSTLL RRLADVNQKY NGAAVDNRVL KADVETLRAK 300 VKMAEDSVKR VTGMSALFPP GSDMSSLSMP FTGSPSDATS DAAVPDDLNN YFSTNSDVGG 360 SNGYMPEMAS SAQEDDDFIN GALAPGKMGR AESLHRVASL EHLQKRMCGG PGPASSGSTS 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MERVFSVEEI PDPFWASQPP ASRDSNAGTG AGPAAPGEGG GGAMNRCPSE WYFQKFLEEA  60
VLDSPVGGNP SPRAAPGGGG GVVVGGAEAV EVKQQPAPAP AAAAAAAATS AVVDPVEFNA  120
MLKQKLEKDL AAVAMWRATG VMPPERFAAS SSLPNADVSH IGTTNPIGGN VVPVQNQLVG  180
GTSGEQGPHF VQSDTLVKQA ASSSSREQSD DDDMEEDEIT GNANPTDQRL RRRKQSNRES  240
ARRSRSRKAA HLNELEAQVS QLRVENSTLL RRLADVNQKY NGAAVDNRVL KADVETLRAK  300
VKMAEDSVKR VTGMSALFPP GSDMSSLSMP FTGSPSDATS DAAVPDDLNN YFSTNSDVGG  360
SNGYMPEMAS SAQEDDDFIN GALAPGKMGR AESLHRVASL EHLQKRMCGG PGPASSGSTS  420
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g05480.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003557420.1	0.0	bZIP transcription factor RISBZ2
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	I1GM78	0.0	I1GM78_BRADI; Uncharacterized protein
STRING	BRADI1G05480.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78
Representative plant	OGRP1839	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-34	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi1g05480.1.p
Entrez Gene	100840761

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]