PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g06225.1.p
Common NameBRADI_1g06225, LOC100823205
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 144aa    MW: 15949.2 Da    PI: 8.043
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g06225.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.12.5e-37131131101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca+dCvlap+fpa++p+++a+v+++FGa nv ++l++lp eer++a++++v eA  ra+dPvyG++gvi++lq++++ ++ e
  Bradi1g06225.1.p  13 RCAACKYLRRRCARDCVLAPHFPASDPQRYACVQRFFGAGNVARMLQQLPAEERRAAADAMVVEASRRAQDPVYGCAGVIHRLQEEIRAVECE 105
                       6******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       la++++++
  Bradi1g06225.1.p 106 LARTRAQI 113
                       **999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.83912113IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-3613110IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSASLDTEGN PRRCAACKYL RRRCARDCVL APHFPASDPQ RYACVQRFFG AGNVARMLQQ  60
LPAEERRAAA DAMVVEASRR AQDPVYGCAG VIHRLQEEIR AVECELARTR AQIAMNQATR  120
LPDLRDDDQQ MPSVELLQGF LSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3031081113LOB family transfactor Ramosa2.1
5ly0_B4e-3031081113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g06225.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559344.11e-100LOB domain-containing protein 24
SwissprotP594681e-45LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0Q3J4B91e-98A0A0Q3J4B9_BRADI; Uncharacterized protein
STRINGOGLUM03G36620.15e-53(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.14e-48LOB domain-containing protein 24