PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g07310.3.p

Common Name

LOC100838130

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 192aa MW: 20598.4 Da PI: 11.7036

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g07310.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.8	4.3e-12	54	101	2	49
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 + +r+rrk +NR++ArrsR+RK+++++eL+ ++++L a+ k+L +l Bradi1g07310.3.p 54 ELQRRQRRKLSNRLSARRSRARKQQRLDELRAEAAQLRAQKKELGARL 101 55689*************************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.9E-9	49	102	No hit	No description
SMART	SM00338	1.5E-9	53	117	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-7	54	101	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.174	55	101	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.34E-8	57	102	No hit	No description
PROSITE pattern	PS00036	0	60	75	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MLSLQEAIDF DHLDVMTSGF GGFTPWGPDT CPTLEQLMAS SSSSVAAEEE DEEELQRRQR 60 RKLSNRLSAR RSRARKQQRL DELRAEAAQL RAQKKELGAR LHAAARHGLA ARGQNARLRA 120 EAAALARRLR DARRLLALQR LTRQLLVLRP PQPAQPAGNG AAGQAGPGAA DFAAPAVAAP 180 QGLLAAASLM T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	76	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g07310.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559385.2	1e-129	ocs element-binding factor 1
TrEMBL	I1GMV2	1e-127	I1GMV2_BRADI; Uncharacterized protein
STRING	BRADI1G07310.1	1e-128	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13845	24	29
Representative plant	OGRP12644	4	5

Link Out ? help Back to Top
Phytozome	Bradi1g07310.3.p
Entrez Gene	100838130