PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g07600.1.p

Common Name

BRADI_1g07600, LOC100841172

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 389aa MW: 40302.5 Da PI: 9.606

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g07600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.5e-38	80	137	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Bradi1g07600.1.p 80 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 137 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.9E-32	82	136	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-27	83	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MIQELLGGTP MDQHHHHQQI KSATNAMAHH HVSSLPMVLQ PISANPSPTS SSTSSRSSTQ 60 RSPSATSSPQ GQGQQQGPEQ APLRCPRCNS SNTKFCYYNN YNLTQPRHFC KTCRRYWTKG 120 GALRNVPIGG GCRKPRPMPA PVAKQSTVVP AASCKSALSG TGIGMAPPPL GLGVGPAMSS 180 WAPQQLMALL NSTRAMQGLH HGGQGHGHGG GGNNVHRLLG LDTMGQLQVL PGHSPNNAMW 240 PPVAHRPMPP PPPMHLDMAG PLGLGLGGHS DLFSNLGLKP PSSSSLAPAA SYYNDQLNAV 300 VSNGGGGAGR PNAYESPSSY SCATTMASLP AASSTVSSGL TVGMDQQQPP VSTSSSLAAQ 360 EMQYWNSGPA AMSMAAWPDL PALNGAFP*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MIQELLGGTP MDQHHHHQQI KSATNAMAHH HVSSLPMVLQ PISANPSPTS SSTSSRSSTQ  60
RSPSATSSPQ GQGQQQGPEQ APLRCPRCNS SNTKFCYYNN YNLTQPRHFC KTCRRYWTKG  120
GALRNVPIGG GCRKPRPMPA PVAKQSTVVP AASCKSALSG TGIGMAPPPL GLGVGPAMSS  180
WAPQQLMALL NSTRAMQGLH HGGQGHGHGG GGNNVHRLLG LDTMGQLQVL PGHSPNNAMW  240
PPVAHRPMPP PPPMHLDMAG PLGLGLGGHS DLFSNLGLKP PSSSSLAPAA SYYNDQLNAV  300
VSNGGGGAGR PNAYESPSSY SCATTMASLP AASSTVSSGL TVGMDQQQPP VSTSSSLAAQ  360
EMQYWNSGPA AMSMAAWPDL PALNGAFP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g07600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559395.1	0.0	dof zinc finger protein DOF3.2
TrEMBL	I1GMY8	0.0	I1GMY8_BRADI; Uncharacterized protein
STRING	BRADI1G07600.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-32	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Bradi1g07600.1.p
Entrez Gene	100841172