PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g07970.1.p
Common NameBRADI_1g07970
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 414aa    MW: 44803.3 Da    PI: 8.3482
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g07970.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY901.9e-28191247259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +DgynWrKYGqK+ k++e prsYY+Ct + Cpvkk vers  d+ + eitY+g+H+h+
  Bradi1g07970.1.p 191 KDGYNWRKYGQKQLKDAESPRSYYKCTREACPVKKIVERSF-DGCIKEITYKGRHTHP 247
                       7****************************************.***************8 PP
2WRKY100.31.2e-31323381159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg++ prsYY+Ct ++C+v+k++er++++p++v +tY+g+H h+
  Bradi1g07970.1.p 323 LDDGYRWRKYGQKVVKGNPRPRSYYKCTAENCNVRKQIERASSNPSCVLTTYTGRHSHH 381
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.494185249IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-25187249IPR003657WRKY domain
SuperFamilySSF1182909.94E-23190249IPR003657WRKY domain
SMARTSM007748.7E-29190248IPR003657WRKY domain
PfamPF031061.3E-21191247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-32308383IPR003657WRKY domain
SuperFamilySSF1182901.96E-27316383IPR003657WRKY domain
PROSITE profilePS5081133.35318383IPR003657WRKY domain
SMARTSM007742.4E-34323382IPR003657WRKY domain
PfamPF031061.2E-23324381IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MADRRGDAMR QQQQPFGSGQ ERVFDGGGGG GPAFGGDYDH ASSSYMALLG TGVNPQPLPP  60
PPAAWAVEEV TSATAINLTP QFSMANYAPP SSSSYQQNPA SFASPFAAAA LHNPYQPPST  120
TYFNHADPPP QWPPRAPSSS LPPPRGNNFA LQHEQQQQQQ SMQMQLLRAL GRPHQALASA  180
PAAAAIEQPG KDGYNWRKYG QKQLKDAESP RSYYKCTREA CPVKKIVERS FDGCIKEITY  240
KGRHTHPRPP HQPRRGGDNV ADAGSGADAE EEEEEHGDQL PSDDEDNGQE GQDRTAGGGA  300
AAGQRVVKKH KITLQTPSEV DLLDDGYRWR KYGQKVVKGN PRPRSYYKCT AENCNVRKQI  360
ERASSNPSCV LTTYTGRHSH HPPGRATGGS SAVPTPSTAI GNTARQLKEE SRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-30314383877Probable WRKY transcription factor 4
2lex_A4e-30314383877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g07970.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638037e-91AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313698.10.0probable WRKY transcription factor 25
TrEMBLI1GN290.0I1GN29_BRADI; Uncharacterized protein
STRINGBRADI1G07970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Representative plantOGRP1583233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.25e-47WRKY DNA-binding protein 26