PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g09177.1.p

Common Name

BRADI_1g09177, LOC100843822

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 322aa MW: 35782.9 Da PI: 9.5456

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g09177.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.8	3.8e-08	152	197	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +rEr+RR+++ ++++ L +l ++ + +K +i++ A YI++L+ Bradi1g09177.1.p 152 HMMRERQRREKLSQSYADLYAMLSSR-----SRADKNSIVQSAAMYIRELE 197 889********************8.....699999*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-12	147	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.973	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-10	151	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-5	151	197	No hit	No description
Pfam	PF00010	2.8E-5	152	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-5	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MKKTLDEAHR RASPRGREKQ SKDEITRPRE MQMDSYYAFQ QDDSPFFAAA GAHPASPELP 60 FADLMASLLE EPPVVAAKPS AFQKYRDAGA RGGAGGSSSS SGGRGNIHRR VMDTLGRIGS 120 GGDQVRQEER QEEPPQQQQP AGAVESSRGF RHMMRERQRR EKLSQSYADL YAMLSSRSRA 180 DKNSIVQSAA MYIRELEGAK DQLERKNEEL KAKILGHDTK QQCVKVQFEV DEPSSSIDSM 240 IGALRRLKSM NVKARGIRST LSGHRLATEM NVETTVAASE VERAVEEALR EVERNQPDSE 300 TTFPGSRRGS WSQTSHVQNV F*

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g09177.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014752663.1	0.0	transcription factor BHLH148
Swissprot	Q75KV9	1e-114	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A0Q3N9B8	0.0	A0A0Q3N9B8_BRADI; Uncharacterized protein
STRING	BRADI1G09177.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50
Representative plant	OGRP9763	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	6e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi1g09177.1.p
Entrez Gene	100843822

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]