PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g09606.1.p
Common NameBRADI_1g09606
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 143aa    MW: 15637.8 Da    PI: 8.7301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g09606.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-093863126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      ykt+lC     +G C yGdrC+FaHg
  Bradi1g09606.1.p 38 YKTKLCEKIETNGRCMYGDRCTFAHG 63
                      9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-163669IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-103668IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9953765IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-53764IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-63863IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGQTGGRPLC LPSQSSERIM VAGSQKWSNQ PSLTKIYYKT KLCEKIETNG RCMYGDRCTF  60
AHGVAELRGP SFAQGPTIHN PGEMKMVEAQ KCEIQSAPAT SGRASPPVPT QDGVDKMSNL  120
ERLSQKKLEG IRGIYGDWPE QY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g09606.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230380.11e-104mRNA decay factor CTH1
TrEMBLA0A0Q3JMU41e-102A0A0Q3JMU4_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Representative plantOGRP10392510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-10C3H family protein