PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g10610.1.p
Common NameBRADI_1g10610, LOC100825983
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 236aa    MW: 24579.4 Da    PI: 8.0313
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g10610.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer841.7e-261166357
       ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                      + +Y+eCl+NhAa+lG++a DGC+E++p++ ++ + a  l CaACgCHRnFHR+  
  Bradi1g10610.1.p 11 REVYRECLRNHAAKLGTYASDGCCEYTPADADSgAGAGLLLCAACGCHRNFHRKAF 66
                      568**************************877744566689************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.8E-221365IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-91464IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-201464IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.9181465IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.3E-27108178IPR009057Homeodomain-like
SuperFamilySSF466899.4E-16108178IPR009057Homeodomain-like
TIGRFAMsTIGR015656.0E-27116177IPR006455Homeodomain, ZF-HD class
CDDcd000860.00959116176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEQLQQQERA REVYRECLRN HAAKLGTYAS DGCCEYTPAD ADSGAGAGLL LCAACGCHRN  60
FHRKAFLDAT TAAGPHPQTP MLHHHAAPGA PPGYGNMHMA MGAAGVLDGS GGSGRRRTRT  120
KFTEEQKARM LRFAERLGWR MPKREPGRAP GDDEVARFCR EIGVTRQVFK VWMHNHKAGG  180
GGSGGAGGGG GGGAQTSSST TRGGGGGLGG MSTAAMGSGD GEEDDEEVRG NEMCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-181151841780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g10610.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560584.11e-171zinc-finger homeodomain protein 11
SwissprotA2XLF41e-84ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-84ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLI1GNY81e-169I1GNY8_BRADI; Uncharacterized protein
STRINGBRADI1G10610.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-29homeobox protein 24