PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12477.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 470aa    MW: 51802.9 Da    PI: 6.5099
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12477.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53.2e-101242041599
                       -EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  15 rlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +v+pk +ae+     +++ke+ +tl l d + r+ ++ l  ++ +    lt+GW ++ ++++L+  D vvF +  + +++l ++++r 
  Bradi1g12477.1.p 124 AFVVPKACAESLhlsfNHNKEK-QTLDLLDVHRRELQFGL--SGDG---RLTTGWDQYLRDKELNHMDAVVFIR--SANGQLIIGWRRG 204
                       489******9999**8666655.6****************..4444...49**********************4..4678889999985 PP
2Auxin_resp26.52.7e-10229303874
        Auxin_resp   8 ksvFevvYnPrastseFvvkvekvekalk..vkvsvGmRfkmafeted.......ss.errlsGtvvgvsdldpvrW 74 
                       + +F+v+Y+Pr+++ +Fv ++e+v +a    + + +Gm+++m    +d       ++ + ++ G+v++v++   + W
  Bradi1g12477.1.p 229 GGPFRVTYYPRQGW-DFVRPREEVDAANArnIDWRPGMKVRMVCPVDDhelessrAQrRNSYEGIVAAVKNKY-STW 303
                       679********987.9*******9876543399*********9877772222111221223477777777632.233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.64E-8114203No hitNo description
Gene3DG3DSA:2.40.330.106.0E-11123211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-8124207IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-7124204IPR003340B3 DNA binding domain
PfamPF065078.5E-7228303IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAQPPPPRPE LEREVWLACA GPYARLPDTG SRVYYFPRGH ADQCLGAGHP FVPVVTKDAA  60
FPCTVSAVEL FYHADTDDPY AIITLLPNDG QGQAQAQPSD HQINPTDDSK SAAYFVKQLP  120
YDEAFVVPKA CAESLHLSFN HNKEKQTLDL LDVHRRELQF GLSGDGRLTT GWDQYLRDKE  180
LNHMDAVVFI RSANGQLIIG WRRGTLCRYH ASEQIQDVKK ASTAARVAGG PFRVTYYPRQ  240
GWDFVRPREE VDAANARNID WRPGMKVRMV CPVDDHELES SRAQRRNSYE GIVAAVKNKY  300
STWCKLEINW QISWWSPSPE SKVPAWRVEL QRDPSPTNKR KMSQSHDFDA DHPSSKSNVP  360
CQMPGATTAQ YMAGSPIAAG VQGGRQVSIP DALSSSCTPT SETLFGEEIA PTSGVPTQNI  420
ASSSIARSIR LFSVKMASGV APVDATPKDD SPAKNPPAKD DDQNPDESA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A8e-201132919353Auxin response factor 1
4ldw_A8e-201132919353Auxin response factor 1
4ldw_B8e-201132919353Auxin response factor 1
4ldx_A9e-201132919353Auxin response factor 1
4ldx_B9e-201132919353Auxin response factor 1
4ldy_A7e-201132919353Auxin response factor 1
4ldy_B7e-201132919353Auxin response factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12477.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229512.10.0auxin response factor 13-like
TrEMBLA0A2K2DJ580.0A0A2K2DJ58_BRADI; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.13e-30auxin response factor 17