PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12520.2.p
Common NameBRADI_1g12520, LOC100829646
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 353aa    MW: 37483 Da    PI: 4.9769
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12520.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.2e-082933252254
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       ++yps +e+ +LA ++gL+  q+++WF N R +
  Bradi1g12520.2.p 293 DPYPSDNEKLRLAVSTGLSRGQISNWFINARVR 325
                       89*****************************88 PP
2BELL49.31.3e-16151214972
              BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +akLl ll e++ r  qy e+l  v+ sFe + g  + + Ytsl ++a+SrhF +L+ ai  ++
  Bradi1g12520.2.p 151 QAKLLGLLSELESREDQYFEELGRVALSFEPALGPAATAGYTSLMSRAMSRHFGNLRRAILRKL 214
                       58**********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-992212IPR006563POX domain
PfamPF075262.4E-2098210IPR006563POX domain
PROSITE profilePS5007111.386266329IPR001356Homeobox domain
SMARTSM003895.0E-9269333IPR001356Homeobox domain
CDDcd000861.62E-11270330No hitNo description
Gene3DG3DSA:1.10.10.601.2E-24274335IPR009057Homeodomain-like
SuperFamilySSF466891.58E-16275337IPR009057Homeodomain-like
PfamPF059201.7E-16286325IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVAAHLQGSS GSPKQQAPAA ADSANGTLPL QYPQEQRAGP CCHAPGHRGE KDAAAVGPLA  60
LTLGGASAAT DVEAACRCCR ARAVDAPAPE MVVVPSAVRG SRYLVPAQEL LRDAVSMAGA  120
SAGGGGDSDA DEDDEAADET RVQGAAKDGL QAKLLGLLSE LESREDQYFE ELGRVALSFE  180
PALGPAATAG YTSLMSRAMS RHFGNLRRAI LRKLRLLHAA AAARRPPRVD DGGDGGGESE  240
EEEVTEEMVK RLVRRKKQAA AARAAEQVCK PMRGLPEDSV AVLRAWLFDH FLDPYPSDNE  300
KLRLAVSTGL SRGQISNWFI NARVRLWKPM IEEMYNDEFS EDSVSMDDAS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-15275333563Homeobox protein Meis2
4xrm_B2e-15275333563Homeobox protein Meis2
5bng_A1e-15275333159Homeobox protein Meis2
5bng_B1e-15275333159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12520.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3733881e-106AK373388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3029F10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559582.10.0BEL1-like homeodomain protein 11
RefseqXP_024312616.10.0BEL1-like homeodomain protein 11
RefseqXP_024312617.10.0BEL1-like homeodomain protein 11
TrEMBLI1GPL20.0I1GPL2_BRADI; Uncharacterized protein
STRINGBRADI1G12520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.16e-35BEL1-like homeodomain 11