PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g12620.1.p

Common Name

BRADI_1g12620, LOC100831782

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 169aa MW: 18041.3 Da PI: 11.764

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g12620.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.4e-10	64	108	5	49
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 +r +rk++NRe+ArrsR+RK+ ++ L+ ++ L N++L ++ Bradi1g12620.1.p 64 RRLKRKISNRESARRSRARKQRHLDDLRALAARLRHGNRELSARA 108 799************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-6	60	124	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-6	62	112	No hit	No description
PROSITE profile	PS50217	9.243	62	125	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.81E-8	64	113	No hit	No description
Pfam	PF00170	4.6E-7	64	109	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MTTSQGSNAF QSFAPQSNNG FGTNAELTAH PLLPIEDPAC AAASAAIGGV PDHEASDGVF 60 NKERRLKRKI SNRESARRSR ARKQRHLDDL RALAARLRHG NRELSARARA ARGRVALVRL 120 ANAELRAEAD ALGRRLEAAA RQALALGQLY AAAHGHGAFE QTMASLMV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g12620.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559588.1	1e-115	bZIP transcription factor 2
TrEMBL	I1GPM5	1e-114	I1GPM5_BRADI; Uncharacterized protein
STRING	BRADI1G12620.1	1e-115	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22743	4	6

Link Out ? help Back to Top
Phytozome	Bradi1g12620.1.p
Entrez Gene	100831782