PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12677.1.p
Common NameBRADI_1g12677, LOC100833323
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 252aa    MW: 28353.9 Da    PI: 7.1288
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12677.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-101772112155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +++yps+ e++ LA+++gL+ +q+ +WF N+R ++
  Bradi1g12677.1.p 177 RSPYPSELEKAALAESTGLDRKQINNWFINQRKRH 211
                       589*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.2E-21448IPR005540KNOX1
PfamPF037904.3E-21544IPR005540KNOX1
SMARTSM012561.0E-2452103IPR005541KNOX2
PfamPF037911.0E-185899IPR005541KNOX2
SMARTSM011882.9E-4131152IPR005539ELK domain
PROSITE profilePS5007113.378151214IPR001356Homeobox domain
SMARTSM003891.3E-11153218IPR001356Homeobox domain
SuperFamilySSF466892.31E-17153221IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-22157214IPR009057Homeodomain-like
CDDcd000866.36E-12165214No hitNo description
PfamPF059202.7E-15171210IPR008422Homeobox KN domain
PROSITE patternPS000270189212IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGTDAMKAKI MSHPLYPALL RAFIDCQKVG APPEVVGRLS SLADDLKSNS DDVLEQPADP  60
ELDQFMETYC VMLVRYSQEL TRQIQEADHF FRNMEAHIST SALGDNCEGE ASTEDEQEIG  120
DVGGLPVQAA ELKDQFLNKH NGYLSSLWRK LSKKKTKGKL PSGARQKLQQ WWRLNWRSPY  180
PSELEKAALA ESTGLDRKQI NNWFINQRKR HWKPTPPAVE YRSQQQTLYG ASSSSSAAFL  240
TEGHYFTRGS A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12677.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755813.11e-174homeobox protein knotted-1-like 4
SwissprotQ75LX71e-106KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLI1GPN40.0I1GPN4_BRADI; Uncharacterized protein
STRINGBRADI1G12677.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-66KNOTTED-like from Arabidopsis thaliana