PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12690.1.p
Common NameBRADI_1g12690, LOC100833629
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 314aa    MW: 34969.7 Da    PI: 5.5819
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.6e-092332662255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  Bradi1g12690.1.p 233 WPYPSELEKAALAESTGLDGKQINNWFINQRKRH 266
                       69*****************************885 PP
2ELK25.72.6e-09186207122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK +Ll KYsgyL sL+  +s
  Bradi1g12690.1.p 186 ELKSHLLSKYSGYLTSLWRDLS 207
                       9*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-175094IPR005540KNOX1
PfamPF037903.9E-195192IPR005540KNOX1
SMARTSM012568.2E-2798149IPR005541KNOX2
PfamPF037919.7E-22104148IPR005541KNOX2
PROSITE profilePS512139.271186206IPR005539ELK domain
SMARTSM011887.4E-6186207IPR005539ELK domain
PfamPF037891.6E-8186207IPR005539ELK domain
PROSITE profilePS5007112.26206269IPR001356Homeobox domain
SuperFamilySSF466891.28E-17207275IPR009057Homeodomain-like
SMARTSM003891.5E-11208273IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.8E-25211269IPR009057Homeodomain-like
CDDcd000864.42E-11215269No hitNo description
PfamPF059201.3E-15226265IPR008422Homeobox KN domain
PROSITE patternPS000270244267IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDQLPLPSGG SKASTPFHLT LDNTTTSTSP PAPAPGSEPS TRSNHERSTD TIKAKIMSHP  60
LYPALLRSFI ECQKVGAPQE VVGRLCALAG ELESDCGDQR QDSLDAELDE FMETYCHVLV  120
RYKQELTRPI QEADQFFRDI EAQMDSFTLD DNSGGGDDGS SEDDEQEAGH ADGLPEITSQ  180
CAEDNELKSH LLSKYSGYLT SLWRDLSKKK KKGKLPRDAR QKLLHWWQLH YRWPYPSELE  240
KAALAESTGL DGKQINNWFI NQRKRHWKPT PPAVEYRSQQ QQPHYGASSS SSAAFLTEGH  300
YFTGGSAYPP RGP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12690.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352051e-101BT035205.1 Zea mays full-length cDNA clone ZM_BFb0044N12 mRNA, complete cds.
GenBankBT0406221e-101BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
GenBankKJ7275711e-101KJ727571.1 Zea mays clone pUT5431 HB transcription factor (HB110) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559594.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotQ75LX71e-142KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLI1GPN50.0I1GPN5_BRADI; Uncharacterized protein
STRINGBRADI1G12690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-72KNOTTED-like from Arabidopsis thaliana