PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12760.2.p
Common NameBRADI_1g12760, LOC100835778
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 295aa    MW: 31558 Da    PI: 8.8835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12760.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15117163455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+YIk+ q
  Bradi1g12760.2.p 117 DHIMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVRYIKEQQ 163
                       599************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.304113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12117163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-18117175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-16118167No hitNo description
SuperFamilySSF474592.36E-17118178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-15119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDESSLFMQW AMDTLQHEHQ LQHPSLQQLG GSAALKNGGM ASSGNTSAVP VATENDSVGS  60
SSVSWNFASA FSRQPGNEAT TVPSSRARDV PAADPAASRR ASAAAASTGH TSPAARDHIM  120
AERKRREKIN RRFIELSTVI PGLKKMDKAT ILSDAVRYIK EQQEKLRALE DSTATTRSVL  180
VLVKKPCIES PFAAAPTPTT TRSALPEIEV AISESNVMVR IHCEDAKGVL VRLLAQVEGL  240
HLSITHTNVI PFPACTVIIT IVAKVDEGFK ITTEDIAGKL QSALRLKNLE AAKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126ERKRRE
2122127RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12760.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646671e-57AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229513.20.0transcription factor bHLH25
TrEMBLA0A0Q3GSL60.0A0A0Q3GSL6_BRADI; Uncharacterized protein
STRINGBRADI1G12760.11e-102(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-37bHLH family protein