PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13207.1.p
Common NameBRADI_1g13207, LOC100842799
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 132aa    MW: 14220.5 Da    PI: 7.5547
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13207.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.23e-224297258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58
                      +Dgy+W+KYGqK +k+ +  rsY+rC  ++C +kkkve +  dp+ + ++Yeg H+h
  Bradi1g13207.1.p 42 EDGYEWKKYGQKFIKNIQRIRSYFRCRDKRCGAKKKVEWQPGDPS-LRVVYEGAHQH 97
                      7****************************************9987.6899******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-2432100IPR003657WRKY domain
PROSITE profilePS5081118.42936100IPR003657WRKY domain
SuperFamilySSF1182905.75E-2137100IPR003657WRKY domain
SMARTSM007741.3E-214199IPR003657WRKY domain
PfamPF031061.1E-204297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MASTSQPTPT EGVGEGAGHG DEEDQHAAEA AASSGQQLVM PEDGYEWKKY GQKFIKNIQR  60
IRSYFRCRDK RCGAKKKVEW QPGDPSLRVV YEGAHQHGSP SSSSSCTGAG HDGAANRYEL  120
SAQYFGGPRT Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g13207.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8063891e-89JQ806389.1 Hordeum vulgare WRKY transcript factor 48 (WRKY48) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231847.14e-94probable WRKY transcription factor 2
TrEMBLI1GPU49e-93I1GPU4_BRADI; Uncharacterized protein
STRINGBRADI1G13207.11e-93(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-15WRKY DNA-binding protein 57