PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13425.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 204aa    MW: 22538.3 Da    PI: 4.2755
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13425.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.22.8e-213488455
           G2-like  4 lrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55
                      lrWt +LH+ Fveav+  GG+ +A P   k+ +e+m+v gLt  ++kSHLQkYR 
  Bradi1g13425.1.p 34 LRWTDDLHKIFVEAVAYQGGPYEAKPtavKQTMEAMGVTGLTTWNIKSHLQKYRE 88
                      89************************44445567789*****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.22E-112888IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-193187IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-163488IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSNDKPAQNN EALYMSSILA CRILRAMQPT RSFLRWTDDL HKIFVEAVAY QGGPYEAKPT  60
AVKQTMEAMG VTGLTTWNIK SHLQKYREGC DLGAKSPRDV LDTASPSEAS HDPTSETEVA  120
MNNDEAMTGM QMVNNLLMGD MEMAETDFSA DEVQMMENEL MNEIQLIKHG SQCSQIPIDE  180
YVYDLAKYPF DKDSAGSASS SSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g13425.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231922.11e-152protein PHR1-LIKE 2-like isoform X1
RefseqXP_010231927.11e-152protein PHR1-LIKE 2-like isoform X1
RefseqXP_024310546.11e-153protein PHR1-LIKE 2-like isoform X2
TrEMBLI1GPW81e-151I1GPW8_BRADI; Uncharacterized protein
STRINGBRADI1G13422.11e-152(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154991216
Representative plantOGRP1768222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.12e-16G2-like family protein