PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13570.2.p
Common NameBRADI_1g13570, LOC100827245
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 186aa    MW: 20985.8 Da    PI: 8.9864
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13570.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY242.11.1e-7461605170
             YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                         +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+   q l++++h         +e  + ++ ++++n++ + s+s+++ 
  Bradi1g13570.2.p   6 APAEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQDH--------SQESFRAHNISFRENYSDYGSSSKYRM 90 
                       5689*****************************************************9........7788999**************999998 PP

             YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                        +++s+++d+e +     +rPPekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+ihfgl
  Bradi1g13570.2.p  91 PMMFSTKSDQEHTL---HVRPPEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPNIHFGL 160
                       88888887777663...49****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.0E-737160IPR006780YABBY protein
SuperFamilySSF470958.51E-995154IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.1E-5106154IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSAQIAPAEH VCYVHCNFCN TILAVSVPSN SMLNIVTVRC GHCTSLLSVN LRGLIQSLPV  60
QDHSQESFRA HNISFRENYS DYGSSSKYRM PMMFSTKSDQ EHTLHVRPPE KRQRVPSAYN  120
RFIKEEIRRI KTNNPDISHR EAFSTAAKNW AHFPNIHFGL GSNESSKKLD EAIVAPIPQQ  180
VQGLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g13570.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0995850.0EU099585.1 Triticum aestivum YABBY2 (YAB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561769.11e-138protein YABBY 2
SwissprotQ10FZ71e-115YAB2_ORYSJ; Protein YABBY 2
TrEMBLI1GPY51e-137I1GPY5_BRADI; Uncharacterized protein
STRINGBRADI1G13570.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-64YABBY family protein