PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13570.7.p
Common NameBRADI_1g13570
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 145aa    MW: 16599.7 Da    PI: 9.1505
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13570.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY25.83.2e-08625524
             YABBY  5 ssseqvCyvqCnfCntilav 24
                        +e+vCyv+CnfCntila 
  Bradi1g13570.7.p  6 APAEHVCYVHCNFCNTILAE 25
                      5789**************85 PP
2YABBY138.86.4e-432511973170
             YABBY  73 eelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                       e  + ++ ++++n++ + s+s+++  +++s+++d+e +     +rPPekrqrvPsaynrfikeei+rik++nPdishreafs+aaknWahfP+
  Bradi1g13570.7.p  25 ESFRAHNISFRENYSDYGSSSKYRMPMMFSTKSDQEHTL---HVRPPEKRQRVPSAYNRFIKEEIRRIKTNNPDISHREAFSTAAKNWAHFPN 114
                       677899999********9999999888888887777663...49************************************************* PP

             YABBY 166 ihfgl 170
                       ihfgl
  Bradi1g13570.7.p 115 IHFGL 119
                       ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.8E-6727IPR006780YABBY protein
PfamPF046901.6E-3943119IPR006780YABBY protein
SuperFamilySSF470954.84E-954113IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.3E-565113IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MSAQIAPAEH VCYVHCNFCN TILAESFRAH NISFRENYSD YGSSSKYRMP MMFSTKSDQE  60
HTLHVRPPEK RQRVPSAYNR FIKEEIRRIK TNNPDISHRE AFSTAAKNWA HFPNIHFGLG  120
SNESSKKLDE AIVAPIPQQV QGLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g13570.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0995851e-141EU099585.1 Triticum aestivum YABBY2 (YAB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561769.13e-98protein YABBY 2
SwissprotQ10FZ77e-78YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A0Q3J7Z71e-105A0A0Q3J7Z7_BRADI; Uncharacterized protein
STRINGBRADI1G13570.11e-97(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-42YABBY family protein