PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14300.3.p
Common NameBRADI_1g14300, LOC100844646
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 345aa    MW: 37483.2 Da    PI: 10.4877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31275332359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Bradi1g14300.3.p 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGEHNHT 332
                       9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.9E-20226271IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.0E-34261332IPR003657WRKY domain
PROSITE profilePS5081130.297268334IPR003657WRKY domain
SuperFamilySSF1182902.35E-27271332IPR003657WRKY domain
SMARTSM007742.6E-38273333IPR003657WRKY domain
PfamPF031062.5E-27275331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEEVEEANRV AVESCHRVLA LLSQSQDPAQ LRSIAQGTDE ACARFRKVAK LLSNEGGGSP  60
AAGGTHPRAK VVSRRQTPGF LSQKGFLDGN TPVVVLNSAH PSTSSAQVYP RNKTLDSQST  120
HQIGGPPKLV QPLSAHFQFG NVSRYQFQHQ HQQQKMQAEM FKRSNSGINL KFDSPSGTGT  180
MSSARSFMSS LSMDGSVASL DAKSSSFHLI GGPAMSDPVN AQQAPRRRCS GRGEDGNGKC  240
TATGRCHCSK RRKLRVKRTI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS  300
SVRGCPARKH VERCVDDPSM LIVTYEGEHN HTRMPTQSAQ SAQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202693351075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562250.10.0protein WRKY1 isoform X2
SwissprotQ93WU65e-93WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLI1GQ710.0I1GQ71_BRADI; Uncharacterized protein
STRINGBRADI1G14300.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-75WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]