PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14495.1.p
Common NameBRADI_1g14495
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 331aa    MW: 37381.9 Da    PI: 9.1194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14495.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18321131299
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + r+++p  f+++++gk ++   ++le+++g +++v++  + + ++ v+++GW+ Fv+a++Lk gDf++Fk+dg s  e++v +f+ 
  Bradi1g14495.1.p  32 FHERITIPDAFVKRFSGKFAS--NIKLESPNGCTFDVQV--KISFDELVIESGWNAFVSAHDLKMGDFLTFKYDGIS--EMKVLIFDP 113
                       4568***********988555..7***************..*******************************98854..458999875 PP
2B342.21.5e-132333091288
                       HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       + + + + +k+a+ +       e+ t++++  +g++W v+++++++ ++     l+kGW+eF+++n+L+ gD+++Fkl +++
  Bradi1g14495.1.p 233 TPCTMEICRKYADLYlpF----EDETMKFRR-DGKRWYVRCCISNSYQAksaKRLKKGWREFAHDNNLQLGDICLFKLLKKK 309
                       557788888888777542....334777765.9********9955555555688***********************87643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-2218116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.90121114IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-2221116IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-2223112No hitNo description
PfamPF023621.4E-1524112IPR003340B3 DNA binding domain
SMARTSM010191.1E-1224114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-17214312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-20214328IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-4225318IPR003340B3 DNA binding domain
CDDcd100171.20E-12235329No hitNo description
PfamPF023621.3E-11235309IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87261330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRKPCEGSKE KGVGGDAQKR ASCFFKVMIG DFHERITIPD AFVKRFSGKF ASNIKLESPN  60
GCTFDVQVKI SFDELVIESG WNAFVSAHDL KMGDFLTFKY DGISEMKVLI FDPSGCEKTL  120
PCLPMKNATH GQEPDDIASH FHDTPMNSPQ TEISNQGNNT VDISSSSSPS RSSGYVSSSE  180
DDLESLSPKR LILCGRTRPT GSQKKRLKEK IQAIHSEIPI YGCVIRKSSI QGTPCTMEIC  240
RKYADLYLPF EDETMKFRRD GKRWYVRCCI SNSYQAKSAK RLKKGWREFA HDNNLQLGDI  300
CLFKLLKKKK YTMGSSKEKE YTMDVHIIRK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14495.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024312591.11e-179putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0Q3RMG90.0A0A0Q3RMG9_BRADI; Uncharacterized protein
STRINGTRIUR3_12005-P17e-94(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-19B3 family protein