PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14510.3.p
Common NameBRADI_1g14510, LOC100835892
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 659aa    MW: 75402.8 Da    PI: 8.3255
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14510.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-19331121398
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        + +++p++f+++++g+   + ++ le+++g++++v +  +k++++ vlt+GW  Fvk  +L+ gD+vvF++dg+s+f  +v vf+
  Bradi1g14510.3.p  33 AHEMIVPNEFVRRFSGE--IPGEIELETRNGQTYTVGV--SKYPDKLVLTAGWGAFVKTYDLQIGDSVVFRYDGDSQF--NVIVFD 112
                       46699*********777..4558***************..**********************************9999..777776 PP
2B350.53.8e-16349439195
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                       f+ v+++ +v+ s  l+++k+++++++g+k +    +  ++ g++Wev +   +++g+  + +GW++Fvk+n+L+ gD+++F+l ++ +  + 
  Bradi1g14510.3.p 349 FVAVMSKCNVTGSFHLSVSKQYVKRYMGNKVR---CICLQRCGKKWEVHF--GGRPGEKRIVAGWRKFVKDNDLEIGDICIFELLKNyMMCTI 436
                       677888899999999***********999777...566778*********..9999999999*********************9877665555 PP

                       EEE CS
                B3  93 vvk 95 
                        v+
  Bradi1g14510.3.p 437 EVH 439
                       555 PP
3B346.46.9e-15560654199
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                       f+ v+ + +v+++  l+++kk+ae++ g  + +   + le + g++ +v+l   ++++ +   +GW +Fv+++++++gD+++F+l ++  + +
  Bradi1g14510.3.p 560 FVVVMHKTNVTRRFTLSISKKYAEKYlG-GEVQ--RIWLE-RLGERCQVNL--GRRPQDTRVVGGWAKFVRDHEVEVGDICLFELLKNrVSCT 646
                       677888999*****************64.4344..36655.6899******..9999999999*********************887668888 PP

                       .EEEEE-S CS
                B3  92 lvvkvfrk 99 
                       ++v+++r+
  Bradi1g14510.3.p 647 MKVHIIRA 654
                       99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-2117113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-2018112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.5921114IPR003340B3 DNA binding domain
SMARTSM010194.9E-1124117IPR003340B3 DNA binding domain
PfamPF023625.5E-1634112IPR003340B3 DNA binding domain
CDDcd100174.80E-1936112No hitNo description
Gene3DG3DSA:2.40.330.101.9E-21342441IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-20344431IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-19347441No hitNo description
PROSITE profilePS5086311.871349444IPR003340B3 DNA binding domain
SMARTSM010196.6E-9349444IPR003340B3 DNA binding domain
PfamPF023624.8E-14349440IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-20551655IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-19553655IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-18558653No hitNo description
PROSITE profilePS5086310.32560655IPR003340B3 DNA binding domain
SMARTSM010195.1E-8560655IPR003340B3 DNA binding domain
PfamPF023621.3E-13560654IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MCCERCKRRD ERDYCSLDDR EKYFLIFMED GCAHEMIVPN EFVRRFSGEI PGEIELETRN  60
GQTYTVGVSK YPDKLVLTAG WGAFVKTYDL QIGDSVVFRY DGDSQFNVIV FDRFGREKAS  120
SVVAVADNDP LSPHEQEKNR VSTESLNRSH SYPQRMEVQS PTENVNRSQG HPQAMQMPSP  180
TENVNLSQEH PQPMQMPPPT ENMDRSQRHP QPMHMQSPTG NVDGFVGLSR HMEVQSPTEN  240
VNSFVGHSEP TQMQPPTDTM NHCSYHPQTV QMQLSCSHTE RQSKLQNDYS NQGNKTATSP  300
SGDSLPPEDD IEVCEEPRYM LGRKNRLSSA QVKEVDEMVQ HIHHENPIFV AVMSKCNVTG  360
SFHLSVSKQY VKRYMGNKVR CICLQRCGKK WEVHFGGRPG EKRIVAGWRK FVKDNDLEIG  420
DICIFELLKN YMMCTIEVHI IHIKDLDSSS QNGCNKVKRS SKIVACSHSR PELVPTQTMK  480
HSMVRPQSTQ TQSPPIKRKM PLQRVKTLGR ERDSLFSEDS NGDVDTLTDY IAVHKKRLTP  540
IQKREVKKMV QSIDSEIPIF VVVMHKTNVT RRFTLSISKK YAEKYLGGEV QRIWLERLGE  600
RCQVNLGRRP QDTRVVGGWA KFVRDHEVEV GDICLFELLK NRVSCTMKVH IIRAKNVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14510.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752321.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
RefseqXP_014752322.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
RefseqXP_014752323.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
RefseqXP_014752324.10.0putative B3 domain-containing protein Os08g0325100 isoform X1
TrEMBLI1GQ920.0I1GQ92_BRADI; Uncharacterized protein
STRINGBRADI1G14510.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124821536
Representative plantOGRP1394224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-15B3 family protein