PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14530.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 548aa    MW: 62295.6 Da    PI: 8.9442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-15371151296
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        ++ +++p+kf++++ggk   s+t+ le+++g+++ v++  +k+ ++     GW+ F +a++++e+D+++F+++++s+fe +  v
  Bradi1g14530.1.p  37 FRHGMIIPNKFMDHFGGK--ISRTIELESPDGNTYVVEV--SKNLSKKSPCHGWEAFLDAHHIEENDSLLFRHIKNSRFEVL--V 115
                       3567********888988..888****************..55555544567***********************9999554..4 PP
2B357.32.9e-18447543499
                       E-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                B3   4 vltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                       ++ +s+v+++    l++pkk+a+++   ++++ tl+l   e++++W+v++ + + +g+ +l++GW eF+++n+L++ D ++F+l+++ ++ ++
  Bradi1g14530.1.p 447 IMNNSSVGANrlYHLTIPKKYAAKYL--PAGGHTLRLLRpERSKTWDVEM-HPRVGGAKMLRGGWHEFANENRLQVQDLCLFQLMKNeRRLTM 536
                       566777777755458**********4..345568888886888*******.444555689*************************9989**** PP

                       EEEEE-S CS
                B3  93 vvkvfrk 99 
                       +v ++r+
  Bradi1g14530.1.p 537 MVYIIRH 543
                       ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-2022121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-1824120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.03926119IPR003340B3 DNA binding domain
CDDcd100172.01E-1927117No hitNo description
SMARTSM010191.4E-928119IPR003340B3 DNA binding domain
PfamPF023626.7E-1338115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-4269328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-5271327IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-21436544IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-20437544IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-18442542No hitNo description
SMARTSM010197.0E-9444544IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534446544IPR003340B3 DNA binding domain
PfamPF023621.7E-16447543IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MARLESQVQK SCDCCKTYVG HLEGKMKCFQ RHMTADFRHG MIIPNKFMDH FGGKISRTIE  60
LESPDGNTYV VEVSKNLSKK SPCHGWEAFL DAHHIEENDS LLFRHIKNSR FEVLVLDSDD  120
CEKVFSCVGI KVTCNVQERS SDYDDISNSS YADTTKSSGS KEFASCERVH SSHPRKTAKT  180
PAKYSSSEDS DAGEDTEDIC SEYESSFQLD DLQTPLGCDY VLCHRSAQPG VHEEKVTRLL  240
QDKDIRAEAP LLVAIIRQSN LKSRSSGLRP GKNKKWYHRF HIRKDGCAFL RLLGFLRDNQ  300
VQEGDICVFE PMKGTGKKFS LKVHLLRESI HGGSGTGPKR VSSPHGKSRV SSATHIRIST  360
THGRTRANAT PKTRVKEELD HGRSHPYSGS NHGHRAHKQP LESDEYEEPV ERPYMLSDIA  420
CLTWEQEKKV KRRVDAIQSE VPIYVSIMNN SSVGANRLYH LTIPKKYAAK YLPAGGHTLR  480
LLRPERSKTW DVEMHPRVGG AKMLRGGWHE FANENRLQVQ DLCLFQLMKN ERRLTMMVYI  540
IRHNDKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232555.10.0B3 domain-containing protein Os03g0620400
TrEMBLA0A0Q3GTC90.0A0A0Q3GTC9_BRADI; Uncharacterized protein
STRINGBRADI1G14530.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1584433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-12B3 family protein