PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14550.1.p
Common NameBRADI_1g14550, LOC100827346
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 530aa    MW: 59146.9 Da    PI: 8.3073
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-16281111099
                       HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++++ +v+p +f+ +++   + s  ++le ++g +++v +  + ++++++l++GW+ Fv+an++ e+D ++F++ g+s+f  +v vf++
  Bradi1g14550.1.p  28 RNSRHVMVIPESFV-NYSPR-KISGAIKLEAPNGSVYDVGI--TEHQNKTLLRSGWEAFVDANHIVENDLLMFQYRGNSRF--KVIVFDS 111
                       567899********.77433.46679***************..********************************999999..8888775 PP
2B339.31.1e-124415241297
                       HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                       +s+ l++ k++ +++  k  +s+ l+l+   ++++W  ++  ++ +g+  + +GW +F+ +n+L+egD ++F+l+++ ++ ++ v ++
  Bradi1g14550.1.p 441 ASS-LTFGKQYSATYLRK--GSRNLVLQRkGKSQTWHAEM-RDRDGGGLRIFGGWTSFACDNRLREGDLCLFQLMKHkEQLTMIVDII 524
                       444.77777777777433..5567887774667*******.466667799999*********************98879999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.42E-2016114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.1419112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1819114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-1720110No hitNo description
SMARTSM010192.9E-922112IPR003340B3 DNA binding domain
PfamPF023621.1E-1427110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-10228328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-11229326IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.992235334IPR003340B3 DNA binding domain
PfamPF023621.4E-7238330IPR003340B3 DNA binding domain
SMARTSM010190.03239334IPR003340B3 DNA binding domain
CDDcd100174.54E-9250329No hitNo description
SuperFamilySSF1019367.59E-14420520IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-14420522IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-11424521No hitNo description
PROSITE profilePS5086311.321429527IPR003340B3 DNA binding domain
SMARTSM010195.1E-4430524IPR003340B3 DNA binding domain
PfamPF023622.6E-10442524IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MSKSCECCKR YWTHLHGKVK CFVGKMNRNS RHVMVIPESF VNYSPRKISG AIKLEAPNGS  60
VYDVGITEHQ NKTLLRSGWE AFVDANHIVE NDLLMFQYRG NSRFKVIVFD SSGCEKVVSC  120
AHIESNISDQ EPSTNSTDMS SSSSDHNIQS SACGRSDGGQ SGSSGHCRKR ARKDAISSPS  180
KDLSGEESPC EHESSESDDD TLSKSYVLSG QCYLTKEQDA EIVALVQEIQ PERPPLVAMM  240
KPNMKPYPDL VIPKDYALAH FPHKNQTITL QIPGQTKKWH CQFRVRSDGG RCNLFGCDFA  300
GDNHLLEGDL CLFQPTTRAN GRTFKVAVHL LRKASNDHTS RNLVIGSNRG LANSKLASTM  360
RVKEEPDVGE ATLYSEHGFS ENSLEHDGSE SSELPYMMPM GPRLTKSQEK KVLEKLGTIR  420
SELPIYVAVM KKTNLTGQSF ASSLTFGKQY SATYLRKGSR NLVLQRKGKS QTWHAEMRDR  480
DGGGLRIFGG WTSFACDNRL REGDLCLFQL MKHKEQLTMI VDIILREHC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232568.10.0B3 domain-containing protein Os03g0619600 isoform X1
RefseqXP_010232570.10.0B3 domain-containing protein Os03g0619600 isoform X1
RefseqXP_024312408.10.0B3 domain-containing protein Os03g0619600 isoform X1
RefseqXP_024312409.10.0B3 domain-containing protein Os03g0619600 isoform X1
RefseqXP_024312410.10.0B3 domain-containing protein Os03g0619600 isoform X1
RefseqXP_024312411.10.0B3 domain-containing protein Os03g0619600 isoform X1
TrEMBLI1GQ970.0I1GQ97_BRADI; Uncharacterized protein
STRINGBRADI1G14550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1136337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-19B3 family protein