PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14560.18.p
Common NameBRADI_1g14560, LOC100838040
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 474aa    MW: 52983.9 Da    PI: 8.3021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14560.18.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-1521106899
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         d ++++ +v+p +f++++    ++   ++le ++g++++v +  +k+++r+++++GW+ F +an++  + +++F++ g s f  +v +f++
  Bradi1g14560.18.p  21 MDKNSRHSMVIPERFVNHFTRRMPG--NIKLEAPDGNVYDVGV--TKHRNRTIFQSGWETFLDANNIVHNNSLMFRYLGGSYF--KVALFDS 106
                        47788999********777545444..6***************..********************************998888..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.64714107IPR003340B3 DNA binding domain
CDDcd100179.03E-1715105No hitNo description
Gene3DG3DSA:2.40.330.101.9E-1716109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-1916109IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-617107IPR003340B3 DNA binding domain
PfamPF023621.8E-1321105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-11221320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-11222320IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-8227320No hitNo description
PROSITE profilePS508636.809229324IPR003340B3 DNA binding domain
SMARTSM010190.055229328IPR003340B3 DNA binding domain
PfamPF023624.6E-8235321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSNTCECCKK CGKAKRFVRR MDKNSRHSMV IPERFVNHFT RRMPGNIKLE APDGNVYDVG  60
VTKHRNRTIF QSGWETFLDA NNIVHNNSLM FRYLGGSYFK VALFDSSGCE KVVPCPRIKS  120
IGQEPITSSV GMSSSSSYHN TQLSVSRSDG CHSGRRGNGA KRAKTYAASS PSEDLSGEDN  180
PYEHDSSESD DHIVPKPLYI LSVQCYLTEE QVARIVTLVD EIQPDMPLLV TLIRKPNVKP  240
YPDLVIPKDY ATAYFPHRSQ IITFQLAGQT KTWHCKFRAR PDGGRCNLYG CYFVRDNHLL  300
QGDLCLFQPM TNDEGTTFTV MTHVLPKASI DHPSDIIPSS ASTKMTSQVC VKEEQSDASR  360
RPVGCESGSS SHSRNTTNKT VISSPSEESG EDNPSGCNFF DSDDVCTPPG HDYVLSRWSY  420
LAEAQKEKVV MLIRKVQPRS RVFVAIMRKS NVQPLYPCLV HFLSSFSVHQ NPP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14560.18.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232581.10.0B3 domain-containing protein Os03g0620400 isoform X1
RefseqXP_010232586.10.0B3 domain-containing protein Os03g0620400 isoform X1
RefseqXP_024313261.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A2K2DJH10.0A0A2K2DJH1_BRADI; Uncharacterized protein
STRINGBRADI1G14560.11e-150(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-13B3 family protein