PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g14570.2.p

Common Name

BRADI_1g14570

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 281aa MW: 29292 Da PI: 9.6212

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g14570.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.2	1.1e-35	62	116	4	58
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 + +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ Bradi1g14570.2.p 62 AREQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKR 116 5679*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.3E-31	64	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.391	64	118	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-22	65	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	66	102	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MPGQVMEAPL HQLPQLTTQT AHPNYCKQDA TAASTMADMA RFLQQQQQLV QPTNQNPNAN 60 TAREQCPRCA SHDTKFCYYN NYNTSQPRHF CRACRRYWTL GGSLRNVPIG GSTRKRLRPA 120 PQQPLRHRPP VHFASPPPIP QQSAQSQQGL LGSLFALGGA PLLLEGRVGF DLGLGLPGLA 180 GQLGGLTGSG GGGAGEVGLH SLGLRGGGQS AGPGPTSSLS APLLWPSSLF ENNGGNNVET 240 WKVSGGGAAA TAMWAPAPEF SSAATVPQVG GVFHGGAQML *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g14570.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374830	3e-86	AK374830.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077I02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559674.2	0.0	dof zinc finger protein DOF1.7
TrEMBL	A0A0Q3NBG0	0.0	A0A0Q3NBG0_BRADI; Uncharacterized protein
STRING	BRADI1G14570.1	1e-163	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38000.1	1e-25	DNA binding with one finger 4.7

Link Out ? help Back to Top
Phytozome	Bradi1g14570.2.p