PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14750.1.p
Common NameBRADI_1g14750, LOC100831213
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 222aa    MW: 23360.4 Da    PI: 7.7682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14750.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-0580102123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C+ Cgk F++   L  H  +H
  Bradi1g14750.1.p  80 YTCSVCGKAFPSYQALGGHKASH 102
                       9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.6E-1380104IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.78380107IPR007087Zinc finger, C2H2
SuperFamilySSF576672.3E-1080102No hitNo description
SMARTSM003550.00780102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-480102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.3E-10137164No hitNo description
PfamPF139123.8E-14141166IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349142164IPR007087Zinc finger, C2H2
SMARTSM003550.12142164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAVEAVLDAA AIPWPAASDQ QEETTTQHGG LQYCAEGWGK RKRTRRQQQQ PPTEEEHLAL  60
SLLMLARGHR DGTSSLQAQY TCSVCGKAFP SYQALGGHKA SHRPKASPPF IGAVDEPAAN  120
NTPSPAASSS TCSGAATAGK VHECSVCKKT FPTGQALGGH KRCHYEGPLG GSGSASRGFD  180
LNLPALPDII VAEPRYCVPA AEEEEVLSPM AFKKPRLMIP A*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14750.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562286.11e-163zinc finger protein 1
SwissprotQ424302e-40ZFP1_WHEAT; Zinc finger protein 1
TrEMBLI1GQB71e-161I1GQB7_BRADI; Uncharacterized protein
STRINGBRADI1G14750.11e-162(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-36salt tolerance zinc finger