PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14950.3.p
Common NameBRADI_1g14950
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 331aa    MW: 36830 Da    PI: 8.1448
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14950.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00111030323
                      ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                      C++C+ksF++  +L  H+ +H
  Bradi1g14950.3.p 10 CKHCKKSFPSGNSLGGHMALH 30
                      ******************998 PP
2zf-C2H214.30.0001279100223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +C+ C k F + + L  H++ H
  Bradi1g14950.3.p  79 ECQLCFKAFASCDALLMHMKIH 100
                       6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-5632No hitNo description
PROSITE profilePS501578.871835IPR007087Zinc finger, C2H2
SMARTSM003555.1830IPR015880Zinc finger, C2H2-like
PfamPF139125.2E-9831IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SMARTSM003550.2478100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.67978105IPR007087Zinc finger, C2H2
PfamPF139120.002978101IPR007087Zinc finger, C2H2
SuperFamilySSF576673.97E-779100No hitNo description
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576673.97E-7233260No hitNo description
SMARTSM003550.85238260IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138238265IPR007087Zinc finger, C2H2
PfamPF139123.7E-7238260IPR007087Zinc finger, C2H2
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MPPRGRKHWC KHCKKSFPSG NSLGGHMALH RNIHKKRLSG NPSIDSEGYD HRESRWRTRV  60
LSDSTFSDDE AWTLFPKTEC QLCFKAFASC DALLMHMKIH SRREKKMVVE HKASTGDGVH  120
NGAISEALMK KKRTRRMVLD TALTPEMMTY GIEEVGAAHI LVMLSKDHGR YAASVDHDKD  180
CEMDGNMGYH TPMAEMDLNS PVHGPFGDDE LMEPQTSSSY EEVKFVSLSE VIKATTSHEC  240
KLCGKVFLSG RALGGHKKFH SVADRKRASN VPESAVTQPC KQLLELDHES LVHSLPAPNI  300
CNYSSRTPKS EPDPSWVASS LRSEGMLGVL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14950.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232783.10.0uncharacterized protein LOC104582938
TrEMBLI1GQD70.0I1GQD7_BRADI; Uncharacterized protein
STRINGBRADI1G14950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-07C2H2-like zinc finger protein