PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g15123.2.p

Common Name

BRADI_1g15123

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

GRAS

Protein Properties

Length: 713aa MW: 81302 Da PI: 8.6064

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g15123.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	340.1	3.9e-104	335	704	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +lL++cAeavs ++ + a+++L++++ ++sp gd qRla+y++ L+ rla++vs+++++ + + + +++ l+ l+l + v+P+l+ s+ Bradi1g15123.2.p 335 TLLINCAEAVSLNNGSVASEILKKIRRHSSPCGDDSQRLAFYLADCLEIRLAGNVSQISQKTITAPID---VAHILKLLHLCYTVCPYLRASY 424 68*************************************************888888665555554...9999999999******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 + N++Il+ +g+ rvHiiDf+i G+QWp+L++++a+R++gpp+lRiTgv+ p++g e+ ++t rL ++A+ ++vp+e+++ +++++ Bradi1g15123.2.p 425 YLSNKTILDVSKGKPRVHIIDFGICFGFQWPSLFEQFANREGGPPKLRITGVEIPQPGfrPDEMNKNTWLRLVEYANMFKVPLEYRL-ISSKW 516 ******************************************************988888899999**************9.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 e++++e++ ++++E+l+Vn++ ++++l de+ s++s+r++vL++++ ++P+v+++ + +++++ Fl rf ea+++y+alfd l+ + pr++ Bradi1g15123.2.p 517 EAISIEDFYIQKDEVLVVNCINRMKTLGDETISIDSARNRVLNTIRMMKPTVFIHGVVNGSYSTPFFLPRFKEAMYHYTALFDILDRTTPRDN 609 ***************************************************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 ++r+++E +l + +i nv+aceg+er+er e+++kW+ r +a ++++pl+ ++kq ++++r+++ + y v+ee+++lvlgWk+r L+++S Bradi1g15123.2.p 610 KTRMMLEGHLYKFAILNVIACEGSERTERPESYKKWKVRSLRARLEQLPLNPAIVKQTQCMVRQIYHKDYFVDEEDQWLVLGWKGRILYAIST 702 **************************************************************888********************** PP GRAS 373 Wr 374 W+ Bradi1g15123.2.p 703 WK 704 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.66	307	684	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-101	335	704	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MANRPECHAN SSQEFIQTTT ISNDLELFLH PQSSMRYYPP PSIVSSKDAH VAWSTPYSCI 60 YSPQSYIVSS NVRSDWRGIS AADNPEHPRL NPDTTLSYIE QMLMQDTDDK VRSHHGETAI 120 RTMEEPFYKL LGQKYPVLPE LSPLCRCGRL KNLNGNISKL TGQSCSTCSV NISSSNDHSN 180 ENTQDFQAPW TLSSIVGEAF TQGTERMEIG LNINGLAITK KPSRDNHPLQ ISAQDTMRHA 240 SFEVRGRKGY PGIDGFDLLE ERSNKKFAIF SDELIRNELF DKVLLCSENK LVGEGIVLQG 300 TMPYKCAQKD QGRKSALQKT RGRTQQKKEV VDLGTLLINC AEAVSLNNGS VASEILKKIR 360 RHSSPCGDDS QRLAFYLADC LEIRLAGNVS QISQKTITAP IDVAHILKLL HLCYTVCPYL 420 RASYYLSNKT ILDVSKGKPR VHIIDFGICF GFQWPSLFEQ FANREGGPPK LRITGVEIPQ 480 PGFRPDEMNK NTWLRLVEYA NMFKVPLEYR LISSKWEAIS IEDFYIQKDE VLVVNCINRM 540 KTLGDETISI DSARNRVLNT IRMMKPTVFI HGVVNGSYST PFFLPRFKEA MYHYTALFDI 600 LDRTTPRDNK TRMMLEGHLY KFAILNVIAC EGSERTERPE SYKKWKVRSL RARLEQLPLN 660 PAIVKQTQCM VRQIYHKDYF VDEEDQWLVL GWKGRILYAI STWKPNEKTR RD*

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MANRPECHAN SSQEFIQTTT ISNDLELFLH PQSSMRYYPP PSIVSSKDAH VAWSTPYSCI  60
YSPQSYIVSS NVRSDWRGIS AADNPEHPRL NPDTTLSYIE QMLMQDTDDK VRSHHGETAI  120
RTMEEPFYKL LGQKYPVLPE LSPLCRCGRL KNLNGNISKL TGQSCSTCSV NISSSNDHSN  180
ENTQDFQAPW TLSSIVGEAF TQGTERMEIG LNINGLAITK KPSRDNHPLQ ISAQDTMRHA  240
SFEVRGRKGY PGIDGFDLLE ERSNKKFAIF SDELIRNELF DKVLLCSENK LVGEGIVLQG  300
TMPYKCAQKD QGRKSALQKT RGRTQQKKEV VDLGTLLINC AEAVSLNNGS VASEILKKIR  360
RHSSPCGDDS QRLAFYLADC LEIRLAGNVS QISQKTITAP IDVAHILKLL HLCYTVCPYL  420
RASYYLSNKT ILDVSKGKPR VHIIDFGICF GFQWPSLFEQ FANREGGPPK LRITGVEIPQ  480
PGFRPDEMNK NTWLRLVEYA NMFKVPLEYR LISSKWEAIS IEDFYIQKDE VLVVNCINRM  540
KTLGDETISI DSARNRVLNT IRMMKPTVFI HGVVNGSYST PFFLPRFKEA MYHYTALFDI  600
LDRTTPRDNK TRMMLEGHLY KFAILNVIAC EGSERTERPE SYKKWKVRSL RARLEQLPLN  660
PAIVKQTQCM VRQIYHKDYF VDEEDQWLVL GWKGRILYAI STWKPNEKTR RD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-44	337	704	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g15123.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313379.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0Q3GTT0	0.0	A0A0Q3GTT0_BRADI; Uncharacterized protein
STRING	BRADI1G15123.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40
Representative plant	OGRP11365	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-145	GRAS family protein

Link Out ? help Back to Top
Phytozome	Bradi1g15123.2.p