PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g16355.1.p
Common NameBRADI_1g16355, LOC100834855
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 345aa    MW: 37738.8 Da    PI: 7.3689
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g16355.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09292340146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                       r++W++  ++ l ++v+++G+g+Wk I    +   + R+  + k+++++
  Bradi1g16355.1.p 292 RKKWSEMQEKSLMEGVEKYGKGNWKEIKIAYPdvfEDRSTVDMKDKFRN 340
                       789********************************99*******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.794287344IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-10288341IPR009057Homeodomain-like
SuperFamilySSF466892.47E-12289342IPR009057Homeodomain-like
SMARTSM007172.3E-4291344IPR001005SANT/Myb domain
PfamPF002494.5E-8292341IPR001005SANT/Myb domain
CDDcd116602.73E-18293343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MPPLAAADAF LVLEFVAGNR LVPPPAFAAL LASLPSVSPH TSPRLRRGIA LRALDAVFSL  60
SDADAAILLR KARAVLADPD LASCFPDRLT LPVARDDEAA VVDLKRLVDV EWADLPPSTL  120
EIAADRIAGD GALHTWADAD QDTRKKLRLL VGESMELDIL GKLGQGPSKV GADEADLTRE  180
SGKSGHAQEG CSTPHQQDPA KTTTDAPKLV TSATIKGKDK ATSSYVTGLV APDNHKTHPV  240
TGSKRGLMER NRTATVYEWD DSGDSDHERV PHKRQLPTYK KKPEPSFPHK SRKKWSEMQE  300
KSLMEGVEKY GKGNWKEIKI AYPDVFEDRS TVDMKDKFRN MERH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148TRKKLRL
2280292KKPEPSFPHKSRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g16355.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559737.10.0uncharacterized protein LOC100834855
RefseqXP_010233480.10.0uncharacterized protein LOC100834855
TrEMBLI1GQT30.0I1GQT3_BRADI; Uncharacterized protein
STRINGBRADI1G16355.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-10TRF-like 5