PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g17335.2.p

Common Name

BRADI_1g17335

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 245aa MW: 25852.4 Da PI: 10.6845

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g17335.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.9	7e-16	166	208	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lk+ Bradi1g17335.2.p 166 RRQKRMIKNRESAARSRARKQAYMNELENKVSRLEEENRRLKE 208 69************************************98884 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.4E-14	162	222	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.496	164	215	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-14	166	214	No hit	No description
Pfam	PF00170	1.1E-12	166	212	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.06E-11	166	210	No hit	No description
CDD	cd14707	2.94E-19	168	215	No hit	No description
PROSITE pattern	PS00036	0	169	184	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGVQTMASLG GGGGGGGRQG AVYGLTLNEV ESRLGSPLRS MNLDELLRTV LPAAAAGGGP 60 GPGSGKKTVD EVWRDIESGA RGRQSAAMEV GEMTLEDFLS RAGVPVDGGG AHWLLRQYHP 120 PPRSLPVFGH GGGGGGGFLS PSHAGGGRKR GAGGEDEGGG GGGVERRQKR MIKNRESAAR 180 SRARKQAYMN ELENKVSRLE EENRRLKELK VKLQKFLFSF QKKKIPLLCY GTVLVDSLKQ 240 NVIF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	168	RKRGAGGEDEGGGGGGVERRQK

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g17335.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757254.1	1e-144	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9C5Q2	3e-44	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A0Q3KTW5	1e-172	A0A0Q3KTW5_BRADI; Uncharacterized protein
STRING	BRADI1G17335.1	1e-140	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	2e-25	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi1g17335.2.p

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]