PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g17660.1.p
Common NameBRADI_1g17660
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 328aa    MW: 33998.7 Da    PI: 7.9271
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g17660.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.21.9e-24128188259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg +WrKYGqK +++s++prsYYrCt++   gC+++k+v++s+++p+ ++i Y geH+++
  Bradi1g17660.1.p 128 EDGQSWRKYGQKFIHKSTNPRSYYRCTHKhdqGCKATKQVQKSESNPSEFVISYFGEHTCK 188
                       79**************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-26113190IPR003657WRKY domain
SuperFamilySSF1182905.75E-24122190IPR003657WRKY domain
PROSITE profilePS5081122.033122190IPR003657WRKY domain
SMARTSM007749.1E-35127189IPR003657WRKY domain
PfamPF031062.3E-23128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTSHNGGRSS EPPPPQAALY DDLVGVRERA VMLQTVLQGS PVGDAGELMQ GMMTRLSSAF  60
SRLGANGGGV VAASGAGSAA ATASGAGRRP GGRRTRAGAA AGPVRRSSGS RRRSKSPFIK  120
TETVTTPEDG QSWRKYGQKF IHKSTNPRSY YRCTHKHDQG CKATKQVQKS ESNPSEFVIS  180
YFGEHTCKDP STLHLEGAAA PPDHCANLID FSSINNGTAA TASTSAFPHS MLFPGISYSS  240
LPAQGLPAFC EKLTQAAADQ VAAEEGQRMA ATVPLTVGSA PAEYWPAPGE VDAVDAGISS  300
FPSSPSSLGF TGSFGSFGDD DLFGFDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22124188569OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g17660.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559789.10.0probable WRKY transcription factor 29
TrEMBLI1GR430.0I1GR43_BRADI; Uncharacterized protein
STRINGBRADI1G17660.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-23WRKY DNA-binding protein 46