PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g17660.2.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WRKY

Protein Properties

Length: 232aa MW: 24825.5 Da PI: 5.8165

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g17660.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	78	1e-24	32	92	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK +++s++prsYYrCt++ gC+++k+v++s+++p+ ++i Y geH+++ Bradi1g17660.2.p 32 EDGQSWRKYGQKFIHKSTNPRSYYRCTHKhdqGCKATKQVQKSESNPSEFVISYFGEHTCK 92 79************************99999************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-26	17	94	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-24	26	94	IPR003657	WRKY domain
PROSITE profile	PS50811	22.033	26	94	IPR003657	WRKY domain
SMART	SM00774	9.1E-35	31	93	IPR003657	WRKY domain
Pfam	PF03106	1.3E-23	32	92	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MMIQQVCLVT DHRKEQKSKS PFIKTETVTT PEDGQSWRKY GQKFIHKSTN PRSYYRCTHK 60 HDQGCKATKQ VQKSESNPSE FVISYFGEHT CKDPSTLHLE GAAAPPDHCA NLIDFSSINN 120 GTAATASTSA FPHSMLFPGI SYSSLPAQGL PAFCEKLTQA AADQVAAEEG QRMAATVPLT 180 VGSAPAEYWP APGEVDAVDA GISSFPSSPS SLGFTGSFGS FGDDDLFGFD S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-22	28	92	5	69	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g17660.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559789.1	1e-159	probable WRKY transcription factor 29
TrEMBL	A0A2K2DJW2	1e-171	A0A2K2DJW2_BRADI; Uncharacterized protein
STRING	BRADI1G17660.1	1e-159	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46400.1	7e-24	WRKY DNA-binding protein 46

Link Out ? help Back to Top
Phytozome	Bradi1g17660.2.p