PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g17680.2.p
Common NameBRADI_1g17680
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 847aa    MW: 93814.5 Da    PI: 6.3654
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g17680.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.9e-19266365198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +
  Bradi1g17680.2.p 266 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDSKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PG 356
                       99**************************555567778***************9989999999***9.********************887.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv+++++
  Bradi1g17680.2.p 357 GKLVMGFRK 365
                       777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-31258375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-21263366IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-24264365No hitNo description
PROSITE profilePS5086311.561266367IPR003340B3 DNA binding domain
SMARTSM010192.1E-21266366IPR003340B3 DNA binding domain
PfamPF023621.7E-16266365IPR003340B3 DNA binding domain
PROSITE profilePS5105014.632527577IPR011124Zinc finger, CW-type
PfamPF074966.5E-11532574IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MNCMQNSRPQ PVSCQVAPKL FLSPNNQRLF GKSDELLPGR PLESPPLMLD SRNDDIAIVA  60
KSNHPFMVKN IEPGQSSNIF RQKEIENGAR QIKWEQPTLS IGDMGRMPFL IKAQSTLESP  120
QSQCTPRDDI RDPTADSTTS ESLSEACLSM SLAITNNGNK TEATSTMERP SLSPTTLFSD  180
GRELATSLSP FQHAQRARHY LTRPPRVAEG AAFDPMKDGF PHLRVARPPA EGRGRNQLLP  240
RYWPRITDQE LQQISGDSNS TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG  300
RPLTIQDSKG KEWHFQFRFW PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIEPGGKLV  360
MGFRKATNTV SLPDSQISAI ANGSLLGDTF FSSPSENLSI VSGYSGFLQS MKGATDHHPS  420
SLFDHHANSA DGDVSWLKTD RFGGRSDEGS LQFLQRRSRN IGSKSRRLLM DAEDALELKL  480
SWEEAQELLR PAPSAKPTVV MIEDYEFEEY DEPPVFAKRS IFTRRSTGEQ DQWIQCDDCS  540
KWRRLPLNVI IASKWTCPDN TWDPKSCSCS TPQELATKDL HSILQQYEDI RRRKSSYFLK  600
QNIPEMDASS FDALAAATVF GEVGNQGASS VATTTKHPRH RPGCTCIVCI QPPSGKGPKH  660
NPACTCNVCM TVRRRFKTLM MRKKQRQSER EEAEASKKIT WMSRDEPEGS SLSRSPQTLD  720
PARDGDVTML DKVDMNKGHI DLNFHPASRD EVSMVGLLEV ASRPLESYMK QNGLVSLAGE  780
QASSSTQPPM VLPQAAPVGS EEQTPDEARV MSVVEERERE PTDSMAIDEA AGENYGIAAT  840
DNAATA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-672443682126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1672683RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g17680.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586790.0AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562447.20.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0Q3JRF00.0A0A0Q3JRF0_BRADI; Uncharacterized protein
STRINGBRADI1G17680.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]