PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g17700.1.p
Common NameBRADI_1g17700, LOC100828964
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 352aa    MW: 38081.6 Da    PI: 9.655
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g17700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.3e-10146194553
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                       kr +r + NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +
  Bradi1g17700.1.p 146 KRVKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQ 194
                       899**************************************99887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-15142206IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.519144207IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.85E-11146197No hitNo description
Gene3DG3DSA:1.20.5.1709.8E-10146200No hitNo description
PfamPF001705.5E-9146190IPR004827Basic-leucine zipper domain
CDDcd147035.98E-23147196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPPKPGEPPK PPPSGRSPNS LNLPSPLPPV PQPGHHHSPA AGGHHPPPHH RRARSEVAFR  60
FPANVLAGIA GPEDELFSTF MDTDKIAGTS SSPPRSAKHR HSASFDGGGG AGKHKGGVGG  120
VFSDVLEAKK AMSSEELSEL AFVDPKRVKR IIANRQSAAR SKERKARYIT ELERKVQTLQ  180
TEATTLSAQL TLFQRDTTGL SAENTELKIR LQAMEQQAQL RDALNDALKQ EVERLRIATG  240
ETTKSNEAYD RGMHHVPYSP SFFQLSEQHS VQHRASVHQL PPQFQPPHPS APGHQMASHP  300
NTFPDMMQQD SLGRLQGLDI GKGSVPVKSE ADEPLKSEGS SLSANESNST F*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g17700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562448.10.0transcription factor RF2b
SwissprotQ6S4P41e-122RF2B_ORYSJ; Transcription factor RF2b
TrEMBLI1GR480.0I1GR48_BRADI; Uncharacterized protein
STRINGBRADI1G17700.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.17e-70bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]