PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g18400.1.p
Common NameBRADI_1g18400, LOC100843821
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 238aa    MW: 25535.9 Da    PI: 7.328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g18400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12249454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +h ++Er+RR+++N+ + +Lr+l P +   + k+ + a+i   Av++I++L
  Bradi1g18400.1.p  2 SHIAVERNRRRQMNEHLKTLRSLTPAL---YVKRGDQASIIGGAVDFIREL 49
                      89*************************...9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.47E-11154No hitNo description
SuperFamilySSF474595.83E-15171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.939149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-10249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKT LRSLTPALYV KRGDQASIIG GAVDFIRELH VLLEALQANK  60
RRRLNNNLHP CSTPTTPSPR SLPTNNTNSS SPGSGGSSSA ASNTGSGGGV NKEKARELAA  120
CCSSAAAEVE ARISGANLLL RTLSGRAPPG QAAKMVGLLQ ALHLEVLHLN ISTLEDTVLH  180
SFVLQIGLEC QLSVEDLAFE VHQTFCCDYQ QEDHHGQQQL LLELPIAGTV HGDIMIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KRRRL
Function -- GeneRIF ? help Back to Top
  1. this study identifies a transcription factor necessary and sufficient for subsidiary cells formation in the wheat relative Brachypodium distachyon. Unexpectedly, the transcription factor is an ortholog of the stomatal regulator AtMUTE, which defines guard cells precursor fate in Arabidopsis
    [PMID: 28302860]
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g18400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752251.11e-174transcription factor MUTE
TrEMBLI1GRC81e-173I1GRC8_BRADI; Uncharacterized protein
STRINGBRADI1G18400.11e-173(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.13e-29bHLH family protein
Publications ? help Back to Top
  1. Raissig MT, et al.
    Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata.
    Science, 2017. 355(6330): p. 1215-1218
    [PMID:28302860]