PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g18482.1.p
Common NameBRADI_1g18482
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 199aa    MW: 22077.2 Da    PI: 10.074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g18482.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-061071201326
                       S--TTTTT-SS-SS CS
           zf-CCCH  13 GtCkyGdrCkFaHg 26 
                       G C++G +Ck+aHg
  Bradi1g18482.1.p 107 GSCRRGLKCKYAHG 120
                       9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.41384122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4107124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MASSMDMLLP PSYGVLNRQV NVGEAGAWLW AQGAHRLWAA MPEHFWVYVY KVRKCPQPGS  60
HDWITCPYAH KGERARRRDP QRYNYLPVSC PDHPGSNNGG GGGGFRGSCR RGLKCKYAHG  120
VFELWLHPAR FRTRMCEAGA RCPRRICFFA HFRSQLREAG SGSACSDSAV SFLPPRILQR  180
NAAIIGSSSS APAAVARDD
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g18482.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229573.11e-145zinc finger CCCH domain-containing protein 37
TrEMBLA0A0Q3GV131e-145A0A0Q3GV13_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J20047.1.p9e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1118956
Representative plantOGRP886844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-36C3H family protein