PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g18871.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 333aa    MW: 35395.2 Da    PI: 5.0067
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g18871.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2241e-0730533255
               AP2 32 slgkfgtaeeAakaaiaarkkleg 55
                      +lg+f+taeeAa+a++aa+ kl+g
  Bradi1g18871.1.p 30 WLGSFDTAEEAARAHDAAAVKLYG 53
                      *******************99986 PP
2AP232.62e-10113158454
               AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                       +GV+   +  ++vA+I+dp++   r + +lg+f+taeeAa a+ aa+++l 
  Bradi1g18871.1.p 113 RGVYL--SGCKYVARIWDPVQ---RSKLWLGSFDTAEEAAGAHNAAALRLQ 158
                       78875..468********765...5***********************986 PP
3AP238.92.1e-12170219155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       sg++GV+  ++  ++ A+I+dp++   r++ +lg+f t+ eAa+a+++a+ +l+g
  Bradi1g18871.1.p 170 SGFRGVY--PRGSKYIAQIKDPVQ---RTKLRLGTFETPVEAARAYDEAAVRLYG 219
                       79****6..87889*******765...5************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.47161IPR001471AP2/ERF domain
SMARTSM003804.0E-91767IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-102261IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-142561IPR001471AP2/ERF domain
PROSITE profilePS5103212.26101173IPR001471AP2/ERF domain
SMARTSM003806.5E-7113170IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-10113158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-12121160IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-14170227IPR016177DNA-binding domain
PfamPF008473.5E-5170219IPR001471AP2/ERF domain
CDDcd000184.03E-18170228No hitNo description
SMARTSM003802.3E-19171233IPR001471AP2/ERF domain
PROSITE profilePS5103214.341171227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-18172228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MPRSGRSSAG CGDGAASTGR RDSMGQTMTW LGSFDTAEEA ARAHDAAAVK LYGDEAKTNF  60
KNPEAFVSVA EEDNEMHPKK KKAPAAGKAI SLEVQGGRKA TTRANSNSRP ASRGVYLSGC  120
KYVARIWDPV QRSKLWLGSF DTAEEAAGAH NAAALRLQAA APTAKTKARS GFRGVYPRGS  180
KYIAQIKDPV QRTKLRLGTF ETPVEAARAY DEAAVRLYGA TAVTNFEEGS TAGTANDGAG  240
AVNEKQPMAA AAASNDGTES SMDPLNDSLD LPSIDFLSDS VIQGGVQLDD FWADLPSAEW  300
QQVEEFLDDM DLTNWKILCN AGFSDAMFEC SK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g18871.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229577.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0Q3KUJ70.0A0A0Q3KUJ7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2916834
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.14e-12ethylene responsive element binding factor 6