PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g19702.1.p

Common Name

BRADI_1g19702, LOC100840894

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 579aa MW: 61756.9 Da PI: 6.8853

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g19702.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.4	3.1e-13	127	187	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ e a lk + Bradi1g19702.1.p 127 EEAKRRARLVRNRESAHMSRQRKKQYVEELEGKVKAMQATIADLSARISCAAAENAGLKRQ 187 799******************************************9999888888888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.1E-11	125	190	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.4E-12	127	188	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.944	128	191	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-12	130	188	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.0E-15	130	189	No hit	No description
CDD	cd14704	1.72E-19	131	182	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MTGSAAHMAE PCLFADMPSF LDDLPEFPHP PDDETFALED FDLEDLDFDF DLDLFSTDDA 60 QLSTPPPPPP PLATSSSSAG SPGGGSSSSG AAVDGAGGGL KNDESSESSS RSASAVSDGK 120 PRNGEDEEAK RRARLVRNRE SAHMSRQRKK QYVEELEGKV KAMQATIADL SARISCAAAE 180 NAGLKRQLSG VAGTPAPPPL PMYPGLYPLP PPWLHPAYAM RGSQVPLVPI PRLKTRKPAP 240 AEVEPPAKKT RKTKKVASVS LLGLLFLVMV CGCLVPAVNR MYGTVDSGEG IVLAPSHHGR 300 VLAVEGPRNG APDGIDSKLP QNSSETLPAL LYLPRNGKHV KINGNLVIQS VVASEKASSR 360 MSQYDPKISG NPGKEETSLA IPGHVAKLDS GEVPKSAQGI KNKLMVLPPG DRTIYREDDE 420 LLPQWFSEAM SGPTLSSGMC TEVFQFDISP TSADANGIVP VYSSAMPNSS HNLTENLPST 480 RPQKIKNRRI LHSVPIPLQG STSNHTDRLK EHPKNESFAG NKPASSVVVS VLADPREDSE 540 GRISSKSLSR IFVVVLVDSV KYVTYSCVLP FKNHSPHL*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MTGSAAHMAE PCLFADMPSF LDDLPEFPHP PDDETFALED FDLEDLDFDF DLDLFSTDDA  60
QLSTPPPPPP PLATSSSSAG SPGGGSSSSG AAVDGAGGGL KNDESSESSS RSASAVSDGK  120
PRNGEDEEAK RRARLVRNRE SAHMSRQRKK QYVEELEGKV KAMQATIADL SARISCAAAE  180
NAGLKRQLSG VAGTPAPPPL PMYPGLYPLP PPWLHPAYAM RGSQVPLVPI PRLKTRKPAP  240
AEVEPPAKKT RKTKKVASVS LLGLLFLVMV CGCLVPAVNR MYGTVDSGEG IVLAPSHHGR  300
VLAVEGPRNG APDGIDSKLP QNSSETLPAL LYLPRNGKHV KINGNLVIQS VVASEKASSR  360
MSQYDPKISG NPGKEETSLA IPGHVAKLDS GEVPKSAQGI KNKLMVLPPG DRTIYREDDE  420
LLPQWFSEAM SGPTLSSGMC TEVFQFDISP TSADANGIVP VYSSAMPNSS HNLTENLPST  480
RPQKIKNRRI LHSVPIPLQG STSNHTDRLK EHPKNESFAG NKPASSVVVS VLADPREDSE  540
GRISSKSLSR IFVVVLVDSV KYVTYSCVLP FKNHSPHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g19702.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562569.1	0.0	bZIP transcription factor 60
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	I1GRS7	0.0	I1GRS7_BRADI; Uncharacterized protein
STRING	BRADI1G19702.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35
Representative plant	OGRP2171	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	3e-78	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi1g19702.1.p
Entrez Gene	100840894

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]