PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g19740.1.p
Common NameBRADI_1g19740, LOC100841814
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 661aa    MW: 75245.8 Da    PI: 8.133
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g19740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.51.9e-2277167289
              FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       fYn+YA ++GF +r+++s++++r+g    ++++fvC keg+++++  + ++k++r+r + r gC a+++v ++  +kw++tkl leH+H +
  Bradi1g19740.1.p  77 FYNAYALRLGFGIRVARSRSERRKGveVLVMKRFVCMKEGHHKKKAVEsSNKKKRKRLSIRDGCPAMMEVVRRGPEKWVITKLMLEHTHVV 167
                       9**************9999886665216789**********999887757889999*********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-2077168IPR004330FAR1 DNA binding domain
PfamPF105511.1E-24252344IPR018289MULE transposase domain
PROSITE profilePS5096610.2532568IPR007527Zinc finger, SWIM-type
PfamPF044346.1E-10537567IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-4543570IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MEFSSSEGDE LVEDFMDVED DTGTGNVDQG TGVVTSQTLC VDHSVGNELL MAADGLGKNG  60
EPRISMEFES DAAARAFYNA YALRLGFGIR VARSRSERRK GVEVLVMKRF VCMKEGHHKK  120
KAVESSNKKK RKRLSIRDGC PAMMEVVRRG PEKWVITKLM LEHTHVVVSP DKVLEVQLNR  180
LSGKEHDNQL LVVRRNVFGD TDAYGLFSYL MRKQSENSGF FYNIQVDSTN CLRNAVWVDA  240
KSKMAYTYFG DVVYFDTTYS ENENMLPFAA FTGANQHGDS VVFGCALILD RTESSYAWIF  300
ETWLTAMEKR LPFSFTTDEG KAMTEAVAKV FPQCFHRLCR WRILSRCKKK LSDTYMRFPG  360
LHGELKTCIN ECDAMPVFDM FWDSILDKYG LRENTWLQYL FESRHKWVPA YLTSSFFAEL  420
SLAHRAETVS TFYRNNFTTK APLLALITRF DQHVDRSYTN EAQKDLASFH PEQLLKTNSI  480
LEKQAGIIYT KAAFEMFQME LIEALHQYAV KVQDGSYTKY YVERDADPRT RHTVVYNISE  540
NKAWCDCCRF LFSGVPCRHV LAVFISADVT MLPEPCITKR WTKKAKTGPE SVGRSLEDEI  600
RHADSATSRF NDLVRDAMKC AEKGAVSAGS FRVAKEVLRK AFGQIGKLTR AGPQQVDNSR  660
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118132KKKAVESSNKKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g19740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185207.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI1GRT20.0I1GRT2_BRADI; Uncharacterized protein
STRINGBRADI1G19740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-109FAR1-related sequence 5